Cargando…

Gramene: Development and Integration of Trait and Gene Ontologies for Rice

Gramene (http://www.gramene.org/) is a comparative genome database for cereal crops and a community resource for rice. We are populating and curating Gramene with annotated rice (Oryza sativa) genomic sequence data and associated biological information including molecular markers, mutants, phenotype...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jaiswal, Pankaj, Ware, Doreen, Ni, Junjian, Chang, Kuan, Zhao, Wei, Schmidt, Steven, Pan, Xiaokang, Clark, Kenneth, Teytelman, Leonid, Cartinhour, Samuel, Stein, Lincoln, McCouch, Susan
Formato:	Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2002
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447246/ https://www.ncbi.nlm.nih.gov/pubmed/18628886 http://dx.doi.org/10.1002/cfg.156

Ejemplares similares

Gramene QTL database: development, content and applications
por: Ni, Junjian, et al.
Publicado: (2009)

Gramene: a bird's eye view of cereal genomes
por: Jaiswal, Pankaj, et al.
Publicado: (2006)

Gramene: a growing plant comparative genomics resource
por: Liang, Chengzhi, et al.
Publicado: (2008)

Gramene database in 2010: updates and extensions
por: Youens-Clark, Ken, et al.
Publicado: (2011)

GrameneMart: the BioMart data portal for the Gramene project
por: Spooner, William, et al.
Publicado: (2012)

Gramene 2013: comparative plant genomics resources
por: Monaco, Marcela K., et al.
Publicado: (2014)

Gramene 2016: comparative plant genomics and pathway resources
por: Tello-Ruiz, Marcela K., et al.
Publicado: (2016)

Gramene 2018: unifying comparative genomics and pathway resources for plant research
por: Tello-Ruiz, Marcela K, et al.
Publicado: (2018)

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages
por: Jaiswal, Pankaj, et al.
Publicado: (2005)

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations
por: Avraham, Shulamit, et al.
Publicado: (2008)

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
por: Dharmawardhana, Palitha, et al.
Publicado: (2013)

The Complex History of the Domestication of Rice
por: Sweeney, Megan, et al.
Publicado: (2007)

Can biochemical traits bridge the gap between genomics and plant performance? A study in rice under drought
por: Melandri, Giovanni, et al.
Publicado: (2022)

Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice
por: Karavolias, Nicholas G., et al.
Publicado: (2020)

Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation
por: Hanlon, Meredith T., et al.
Publicado: (2023)

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
por: Spindel, Jennifer, et al.
Publicado: (2015)

Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
por: Spindel, Jennifer, et al.
Publicado: (2015)

Beyond gene ontology (GO): using biocuration approach to improve the gene nomenclature and functional annotation of rice S-domain kinase subfamily
por: Naithani, Sushma, et al.
Publicado: (2021)

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)
por: Begum, Hasina, et al.
Publicado: (2015)

AISO: Annotation of Image Segments with Ontologies
por: Lingutla, Nikhil Tej, et al.
Publicado: (2014)

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
por: Schatz, Michael C, et al.
Publicado: (2014)

The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa
por: Wang, Diane R., et al.
Publicado: (2017)

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters
por: Crowell, Samuel, et al.
Publicado: (2016)

CMap 1.01: a comparative mapping application for the Internet
por: Youens-Clark, Ken, et al.
Publicado: (2009)

Diversifying Selection in Plant Breeding
por: McCouch, Susan
Publicado: (2004)

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions
por: Biscarini, Filippo, et al.
Publicado: (2016)

Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice
por: Wang, Diane R., et al.
Publicado: (2016)

Multiple and independent origins of short seeded alleles of GS3 in rice
por: Takano-Kai, Noriko, et al.
Publicado: (2013)

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping
por: Famoso, Adam N., et al.
Publicado: (2011)

Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement
por: Spindel, J E, et al.
Publicado: (2016)

Global Dissemination of a Single Mutation Conferring White Pericarp in Rice
por: Sweeney, Megan T, et al.
Publicado: (2007)

The Sequence Ontology: a tool for the unification of genome annotations
por: Eilbeck, Karen, et al.
Publicado: (2005)

An imputation platform to enhance integration of rice genetic resources
por: Wang, Diane R., et al.
Publicado: (2018)

WTO, an ontology for wheat traits and phenotypes in scientific publications
por: Nédellec, Claire, et al.
Publicado: (2020)

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species
por: Walls, Ramona L., et al.
Publicado: (2019)

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae
por: Meng, Shaowu, et al.
Publicado: (2009)

Functional properties of an alternative, tissue-specific promoter for rice NADPH-dependent dihydroflavonol reductase
por: Kim, Joonki, et al.
Publicado: (2017)

Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks during Domestication
por: Tang, Tian, et al.
Publicado: (2006)

Association mapping and genetic dissection of drought-induced canopy temperature differences in rice
por: Melandri, Giovanni, et al.
Publicado: (2020)

Integrating Molecular Markers and Environmental Covariates To Interpret Genotype by Environment Interaction in Rice (Oryza sativa L.) Grown in Subtropical Areas
por: Monteverde, Eliana, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_7v1bnf8cl0o10j5ti7tra895kr