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Development of a Maize Molecular Evolutionary Genomic Database

PANZEA is the first public database for studying maize genomic diversity. It was initiated as a repository of genomic diversity for an NSF Plant Genome project on ‘Maize Evolutionary Genomics’. PANZEA is hosted at the Bioinformatics Research Center, North Carolina State University, and is open to th...

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Detalles Bibliográficos
Autores principales: Du, Chunguang, Buckler, Edward, Muse, Spencer
Formato: Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2003
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447417/
https://www.ncbi.nlm.nih.gov/pubmed/18629130
http://dx.doi.org/10.1002/cfg.282
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author Du, Chunguang
Buckler, Edward
Muse, Spencer
author_facet Du, Chunguang
Buckler, Edward
Muse, Spencer
author_sort Du, Chunguang
collection PubMed
description PANZEA is the first public database for studying maize genomic diversity. It was initiated as a repository of genomic diversity for an NSF Plant Genome project on ‘Maize Evolutionary Genomics’. PANZEA is hosted at the Bioinformatics Research Center, North Carolina State University, and is open to the public (http://statgen.ncsu.edu/panzea). PANZEA is designed to capture the interrelationships between germplasm, molecular diversity, phenotypic diversity and genome structure. It has the ability to store, integrate and visualize DNA sequence, enzymatic, SSR (simple sequence repeat) marker, germplasm and phenotypic data. The relational data model is selected and implemented in Oracle. An automated DNA sequence data submission tool has been created that allows project researchers to remotely submit their DNA sequence data directly to PANZEA. On-line database search forms and reports have been created to allow users to search or download germplasm, DNA sequence, gene/locus data and much more, directly from the web.
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spelling pubmed-24474172008-07-14 Development of a Maize Molecular Evolutionary Genomic Database Du, Chunguang Buckler, Edward Muse, Spencer Comp Funct Genomics Research Article PANZEA is the first public database for studying maize genomic diversity. It was initiated as a repository of genomic diversity for an NSF Plant Genome project on ‘Maize Evolutionary Genomics’. PANZEA is hosted at the Bioinformatics Research Center, North Carolina State University, and is open to the public (http://statgen.ncsu.edu/panzea). PANZEA is designed to capture the interrelationships between germplasm, molecular diversity, phenotypic diversity and genome structure. It has the ability to store, integrate and visualize DNA sequence, enzymatic, SSR (simple sequence repeat) marker, germplasm and phenotypic data. The relational data model is selected and implemented in Oracle. An automated DNA sequence data submission tool has been created that allows project researchers to remotely submit their DNA sequence data directly to PANZEA. On-line database search forms and reports have been created to allow users to search or download germplasm, DNA sequence, gene/locus data and much more, directly from the web. Hindawi Publishing Corporation 2003-04 /pmc/articles/PMC2447417/ /pubmed/18629130 http://dx.doi.org/10.1002/cfg.282 Text en Copyright © 2003 Hindawi Publishing Corporation. http://creativecommons.org/licenses/by/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Du, Chunguang
Buckler, Edward
Muse, Spencer
Development of a Maize Molecular Evolutionary Genomic Database
title Development of a Maize Molecular Evolutionary Genomic Database
title_full Development of a Maize Molecular Evolutionary Genomic Database
title_fullStr Development of a Maize Molecular Evolutionary Genomic Database
title_full_unstemmed Development of a Maize Molecular Evolutionary Genomic Database
title_short Development of a Maize Molecular Evolutionary Genomic Database
title_sort development of a maize molecular evolutionary genomic database
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447417/
https://www.ncbi.nlm.nih.gov/pubmed/18629130
http://dx.doi.org/10.1002/cfg.282
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