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GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to hav...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447741/ https://www.ncbi.nlm.nih.gov/pubmed/18511460 http://dx.doi.org/10.1093/nar/gkn330 |
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author | Martinez-Guerrero, C. E. Ciria, R. Abreu-Goodger, C. Moreno-Hagelsieb, G. Merino, E. |
author_facet | Martinez-Guerrero, C. E. Ciria, R. Abreu-Goodger, C. Moreno-Hagelsieb, G. Merino, E. |
author_sort | Martinez-Guerrero, C. E. |
collection | PubMed |
description | The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5′ or 3′ regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont. |
format | Text |
id | pubmed-2447741 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-24477412008-07-09 GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways Martinez-Guerrero, C. E. Ciria, R. Abreu-Goodger, C. Moreno-Hagelsieb, G. Merino, E. Nucleic Acids Res Articles The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5′ or 3′ regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont. Oxford University Press 2008-07-01 2008-05-29 /pmc/articles/PMC2447741/ /pubmed/18511460 http://dx.doi.org/10.1093/nar/gkn330 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Martinez-Guerrero, C. E. Ciria, R. Abreu-Goodger, C. Moreno-Hagelsieb, G. Merino, E. GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title_full | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title_fullStr | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title_full_unstemmed | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title_short | GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
title_sort | gecont 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447741/ https://www.ncbi.nlm.nih.gov/pubmed/18511460 http://dx.doi.org/10.1093/nar/gkn330 |
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