Cargando…

GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways

The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to hav...

Descripción completa

Detalles Bibliográficos
Autores principales: Martinez-Guerrero, C. E., Ciria, R., Abreu-Goodger, C., Moreno-Hagelsieb, G., Merino, E.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447741/
https://www.ncbi.nlm.nih.gov/pubmed/18511460
http://dx.doi.org/10.1093/nar/gkn330
_version_ 1782156988167225344
author Martinez-Guerrero, C. E.
Ciria, R.
Abreu-Goodger, C.
Moreno-Hagelsieb, G.
Merino, E.
author_facet Martinez-Guerrero, C. E.
Ciria, R.
Abreu-Goodger, C.
Moreno-Hagelsieb, G.
Merino, E.
author_sort Martinez-Guerrero, C. E.
collection PubMed
description The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5′ or 3′ regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont.
format Text
id pubmed-2447741
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-24477412008-07-09 GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways Martinez-Guerrero, C. E. Ciria, R. Abreu-Goodger, C. Moreno-Hagelsieb, G. Merino, E. Nucleic Acids Res Articles The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5′ or 3′ regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont. Oxford University Press 2008-07-01 2008-05-29 /pmc/articles/PMC2447741/ /pubmed/18511460 http://dx.doi.org/10.1093/nar/gkn330 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Martinez-Guerrero, C. E.
Ciria, R.
Abreu-Goodger, C.
Moreno-Hagelsieb, G.
Merino, E.
GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title_full GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title_fullStr GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title_full_unstemmed GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title_short GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
title_sort gecont 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447741/
https://www.ncbi.nlm.nih.gov/pubmed/18511460
http://dx.doi.org/10.1093/nar/gkn330
work_keys_str_mv AT martinezguerreroce gecont2genecontextanalysisfororthologousproteinsconserveddomainsandmetabolicpathways
AT ciriar gecont2genecontextanalysisfororthologousproteinsconserveddomainsandmetabolicpathways
AT abreugoodgerc gecont2genecontextanalysisfororthologousproteinsconserveddomainsandmetabolicpathways
AT morenohagelsiebg gecont2genecontextanalysisfororthologousproteinsconserveddomainsandmetabolicpathways
AT merinoe gecont2genecontextanalysisfororthologousproteinsconserveddomainsandmetabolicpathways