LocalMove: computing on-lattice fits for biopolymers

Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for eithe...

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Detalles Bibliográficos
Autores principales: Ponty, Y., Istrate, R., Porcelli, E., Clote, P.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447748/
https://www.ncbi.nlm.nih.gov/pubmed/18556754
http://dx.doi.org/10.1093/nar/gkn367
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author Ponty, Y.
Istrate, R.
Porcelli, E.
Clote, P.
author_facet Ponty, Y.
Istrate, R.
Porcelli, E.
Clote, P.
author_sort Ponty, Y.
collection PubMed
description Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/.
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spelling pubmed-24477482008-07-09 LocalMove: computing on-lattice fits for biopolymers Ponty, Y. Istrate, R. Porcelli, E. Clote, P. Nucleic Acids Res Articles Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/. Oxford University Press 2008-07-01 2008-06-13 /pmc/articles/PMC2447748/ /pubmed/18556754 http://dx.doi.org/10.1093/nar/gkn367 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Ponty, Y.
Istrate, R.
Porcelli, E.
Clote, P.
LocalMove: computing on-lattice fits for biopolymers
title LocalMove: computing on-lattice fits for biopolymers
title_full LocalMove: computing on-lattice fits for biopolymers
title_fullStr LocalMove: computing on-lattice fits for biopolymers
title_full_unstemmed LocalMove: computing on-lattice fits for biopolymers
title_short LocalMove: computing on-lattice fits for biopolymers
title_sort localmove: computing on-lattice fits for biopolymers
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447748/
https://www.ncbi.nlm.nih.gov/pubmed/18556754
http://dx.doi.org/10.1093/nar/gkn367
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