Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data

The major public microarray repositories Gene Expression Omnibus and ArrayExpress are growing rapidly. This enables meta-analysis studies, in which expression data from multiple individual studies are combined. To facilitate these types of studies, we developed Microarray Retriever for searching and...

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Detalles Bibliográficos
Autores principales: Ivliev, Alexander E., Hoen, Peter A. C. 't, Villerius, Michel P., den Dunnen, Johan T., Brandt, Bernd W.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447788/
https://www.ncbi.nlm.nih.gov/pubmed/18463138
http://dx.doi.org/10.1093/nar/gkn213
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author Ivliev, Alexander E.
Hoen, Peter A. C. 't
Villerius, Michel P.
den Dunnen, Johan T.
Brandt, Bernd W.
author_facet Ivliev, Alexander E.
Hoen, Peter A. C. 't
Villerius, Michel P.
den Dunnen, Johan T.
Brandt, Bernd W.
author_sort Ivliev, Alexander E.
collection PubMed
description The major public microarray repositories Gene Expression Omnibus and ArrayExpress are growing rapidly. This enables meta-analysis studies, in which expression data from multiple individual studies are combined. To facilitate these types of studies, we developed Microarray Retriever for searching and retrieval of data from GEO and ArrayExpress. The tool allows access to the two repositories simultaneously, to search in the repositories using complex queries, to retrieve microarray data for published articles and to download data in one structured archive. The tool is available on the web at: http://www.lgtc.nl/MaRe/
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spelling pubmed-24477882008-07-09 Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data Ivliev, Alexander E. Hoen, Peter A. C. 't Villerius, Michel P. den Dunnen, Johan T. Brandt, Bernd W. Nucleic Acids Res Articles The major public microarray repositories Gene Expression Omnibus and ArrayExpress are growing rapidly. This enables meta-analysis studies, in which expression data from multiple individual studies are combined. To facilitate these types of studies, we developed Microarray Retriever for searching and retrieval of data from GEO and ArrayExpress. The tool allows access to the two repositories simultaneously, to search in the repositories using complex queries, to retrieve microarray data for published articles and to download data in one structured archive. The tool is available on the web at: http://www.lgtc.nl/MaRe/ Oxford University Press 2008-07-01 2008-05-07 /pmc/articles/PMC2447788/ /pubmed/18463138 http://dx.doi.org/10.1093/nar/gkn213 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Ivliev, Alexander E.
Hoen, Peter A. C. 't
Villerius, Michel P.
den Dunnen, Johan T.
Brandt, Bernd W.
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title_full Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title_fullStr Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title_full_unstemmed Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title_short Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
title_sort microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447788/
https://www.ncbi.nlm.nih.gov/pubmed/18463138
http://dx.doi.org/10.1093/nar/gkn213
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