The Vienna RNA Websuite

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA–RNA interactions,...

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Detalles Bibliográficos
Autores principales: Gruber, Andreas R., Lorenz, Ronny, Bernhart, Stephan H., Neuböck, Richard, Hofacker, Ivo L.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447809/
https://www.ncbi.nlm.nih.gov/pubmed/18424795
http://dx.doi.org/10.1093/nar/gkn188
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author Gruber, Andreas R.
Lorenz, Ronny
Bernhart, Stephan H.
Neuböck, Richard
Hofacker, Ivo L.
author_facet Gruber, Andreas R.
Lorenz, Ronny
Bernhart, Stephan H.
Neuböck, Richard
Hofacker, Ivo L.
author_sort Gruber, Andreas R.
collection PubMed
description The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA–RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.
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spelling pubmed-24478092008-07-09 The Vienna RNA Websuite Gruber, Andreas R. Lorenz, Ronny Bernhart, Stephan H. Neuböck, Richard Hofacker, Ivo L. Nucleic Acids Res Articles The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA–RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/. Oxford University Press 2008-07-01 2008-04-19 /pmc/articles/PMC2447809/ /pubmed/18424795 http://dx.doi.org/10.1093/nar/gkn188 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Gruber, Andreas R.
Lorenz, Ronny
Bernhart, Stephan H.
Neuböck, Richard
Hofacker, Ivo L.
The Vienna RNA Websuite
title The Vienna RNA Websuite
title_full The Vienna RNA Websuite
title_fullStr The Vienna RNA Websuite
title_full_unstemmed The Vienna RNA Websuite
title_short The Vienna RNA Websuite
title_sort vienna rna websuite
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447809/
https://www.ncbi.nlm.nih.gov/pubmed/18424795
http://dx.doi.org/10.1093/nar/gkn188
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