Cargando…
Associating transcription factor-binding site motifs with target GO terms and target genes
The roles and target genes of many transcription factors (TFs) are still unknown. To predict the roles of TFs, we present a computational method for associating Gene Ontology (GO) terms with TF-binding motifs. The method works by ranking all genes as potential targets of the TF, and reporting GO ter...
Autores principales: | Bodén, Mikael, Bailey, Timothy L. |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2008
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2475605/ https://www.ncbi.nlm.nih.gov/pubmed/18544606 http://dx.doi.org/10.1093/nar/gkn374 |
Ejemplares similares
-
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site
por: Tharakaraman, Kannan, et al.
Publicado: (2008) -
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
por: Naughton, Brian T., et al.
Publicado: (2006) -
Theoretical and empirical quality assessment of transcription factor-binding motifs
por: Medina-Rivera, Alejandra, et al.
Publicado: (2011) -
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
por: Zamanighomi, Mahdi, et al.
Publicado: (2017) -
High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites
por: Whitington, Tom, et al.
Publicado: (2009)