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Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms

A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. A...

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Detalles Bibliográficos
Autores principales: Immirzi, Attilio, Erra, Loredana, Tedesco, Consiglia
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483486/
https://www.ncbi.nlm.nih.gov/pubmed/19461847
http://dx.doi.org/10.1107/S0021889808020074
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author Immirzi, Attilio
Erra, Loredana
Tedesco, Consiglia
author_facet Immirzi, Attilio
Erra, Loredana
Tedesco, Consiglia
author_sort Immirzi, Attilio
collection PubMed
description A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. After first selecting a number of solutions using a Monte Carlo approach with severe filters, which reject the most unrealistic solutions, genetic algorithms (crossover and mutations) are applied. In fact, the initial selection step alone is, frequently, a powerful tool for discovering structures, without recourse to the genetic algorithms. The procedure, while suffering from the limitation that connectivity must be known, is effective in cases where direct methods are not applicable because the diffraction data are scarce, are limited to low diffraction angles or are missing in specific portions of the reciprocal space. The main features of the algorithm are described and examples of validation given. The routines are now available as part of the freely distributed general-purpose program TRY. The program is available on the Web at http://www.theochem.unisa.it/try.html.
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spelling pubmed-24834862009-03-05 Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms Immirzi, Attilio Erra, Loredana Tedesco, Consiglia J Appl Crystallogr Research Papers A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. After first selecting a number of solutions using a Monte Carlo approach with severe filters, which reject the most unrealistic solutions, genetic algorithms (crossover and mutations) are applied. In fact, the initial selection step alone is, frequently, a powerful tool for discovering structures, without recourse to the genetic algorithms. The procedure, while suffering from the limitation that connectivity must be known, is effective in cases where direct methods are not applicable because the diffraction data are scarce, are limited to low diffraction angles or are missing in specific portions of the reciprocal space. The main features of the algorithm are described and examples of validation given. The routines are now available as part of the freely distributed general-purpose program TRY. The program is available on the Web at http://www.theochem.unisa.it/try.html. International Union of Crystallography 2008-08-01 2008-07-16 /pmc/articles/PMC2483486/ /pubmed/19461847 http://dx.doi.org/10.1107/S0021889808020074 Text en © Attilio Immirzi et al. 2008 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Immirzi, Attilio
Erra, Loredana
Tedesco, Consiglia
Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title_full Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title_fullStr Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title_full_unstemmed Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title_short Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
title_sort finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483486/
https://www.ncbi.nlm.nih.gov/pubmed/19461847
http://dx.doi.org/10.1107/S0021889808020074
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