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Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms
A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. A...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483486/ https://www.ncbi.nlm.nih.gov/pubmed/19461847 http://dx.doi.org/10.1107/S0021889808020074 |
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author | Immirzi, Attilio Erra, Loredana Tedesco, Consiglia |
author_facet | Immirzi, Attilio Erra, Loredana Tedesco, Consiglia |
author_sort | Immirzi, Attilio |
collection | PubMed |
description | A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. After first selecting a number of solutions using a Monte Carlo approach with severe filters, which reject the most unrealistic solutions, genetic algorithms (crossover and mutations) are applied. In fact, the initial selection step alone is, frequently, a powerful tool for discovering structures, without recourse to the genetic algorithms. The procedure, while suffering from the limitation that connectivity must be known, is effective in cases where direct methods are not applicable because the diffraction data are scarce, are limited to low diffraction angles or are missing in specific portions of the reciprocal space. The main features of the algorithm are described and examples of validation given. The routines are now available as part of the freely distributed general-purpose program TRY. The program is available on the Web at http://www.theochem.unisa.it/try.html. |
format | Text |
id | pubmed-2483486 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-24834862009-03-05 Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms Immirzi, Attilio Erra, Loredana Tedesco, Consiglia J Appl Crystallogr Research Papers A new procedure for performing structural analysis of crystalline materials from diffraction data, using internal coordinates, is described. For starting information only unit-cell content, space group, chemical formula, molecular connectivity and a limited amount of diffraction data are required. After first selecting a number of solutions using a Monte Carlo approach with severe filters, which reject the most unrealistic solutions, genetic algorithms (crossover and mutations) are applied. In fact, the initial selection step alone is, frequently, a powerful tool for discovering structures, without recourse to the genetic algorithms. The procedure, while suffering from the limitation that connectivity must be known, is effective in cases where direct methods are not applicable because the diffraction data are scarce, are limited to low diffraction angles or are missing in specific portions of the reciprocal space. The main features of the algorithm are described and examples of validation given. The routines are now available as part of the freely distributed general-purpose program TRY. The program is available on the Web at http://www.theochem.unisa.it/try.html. International Union of Crystallography 2008-08-01 2008-07-16 /pmc/articles/PMC2483486/ /pubmed/19461847 http://dx.doi.org/10.1107/S0021889808020074 Text en © Attilio Immirzi et al. 2008 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Immirzi, Attilio Erra, Loredana Tedesco, Consiglia Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title | Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title_full | Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title_fullStr | Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title_full_unstemmed | Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title_short | Finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
title_sort | finding crystal structures from few diffraction data by a combination of a random search with genetic algorithms |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483486/ https://www.ncbi.nlm.nih.gov/pubmed/19461847 http://dx.doi.org/10.1107/S0021889808020074 |
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