Cargando…

PatternLab for proteomics: a tool for differential shotgun proteomics

BACKGROUND: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform semi-relative protein quantitation in shotgun proteomics data by correlating the number of tandem mass spectra obtained...

Descripción completa

Detalles Bibliográficos
Autores principales:	Carvalho, Paulo C, Fischer, Juliana SG, Chen, Emily I, Yates, John R, Barbosa, Valmir C
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2488363/ https://www.ncbi.nlm.nih.gov/pubmed/18644148 http://dx.doi.org/10.1186/1471-2105-9-316

Ejemplares similares

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data
por: Carvalho, Paulo C, et al.
Publicado: (2009)

PAnalyzer: A software tool for protein inference in shotgun proteomics
por: Prieto, Gorka, et al.
Publicado: (2012)

Estimating relative abundances of proteins from shotgun proteomics data
por: McIlwain, Sean, et al.
Publicado: (2012)

Shotgun Proteomics and Biomarker Discovery
por: McDonald, W. Hayes, et al.
Publicado: (2002)

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results
por: Braisted, John C, et al.
Publicado: (2008)

ESTclean: a cleaning tool for next-gen transcriptome shotgun sequencing
por: Tae, Hongseok, et al.
Publicado: (2012)

Shotgun proteomics of the barley seed proteome
por: Mahalingam, Ramamurthy
Publicado: (2017)

Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics
por: Rauniyar, Navin, et al.
Publicado: (2014)

Visualisation tool for peptide fractionation data in proteomics: application to OFFGEL isoelectric focussing
por: Azulay, David-Olivier D, et al.
Publicado: (2010)

Quick microbial molecular phenotyping by differential shotgun proteomics
por: Gouveia, Duarte, et al.
Publicado: (2020)

Perfluorooctanoic Acid for Shotgun Proteomics
por: Kadiyala, Chandra Sekhar Rao, et al.
Publicado: (2010)

A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom
por: Trevisan-Silva, Dilza, et al.
Publicado: (2017)

Shotgun Proteomics as a Powerful Tool for the Study of the Proteomes of Plants, Their Pathogens, and Plant–Pathogen Interactions
por: Balotf, Sadegh, et al.
Publicado: (2022)

HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis
por: Ferravante, Carlo, et al.
Publicado: (2021)

Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
por: Weniger, Markus, et al.
Publicado: (2007)

CodaChrome: a tool for the visualization of proteome conservation across all fully sequenced bacterial genomes
por: Rokicki, Joe, et al.
Publicado: (2014)

APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools
por: Malm, Erik K, et al.
Publicado: (2014)

PlantSimLab - a modeling and simulation web tool for plant biologists
por: Ha, S., et al.
Publicado: (2019)

Shotgun Proteomics for the Identification and Profiling of the Tear Proteome of Keratoconus Patients
por: López-López, Maite, et al.
Publicado: (2022)

Shotgun proteomic analysis of Anaeroglobus geminatus
por: Bao, Kai, et al.
Publicado: (2017)

Shotgun proteomics to characterize wastewater proteins
por: Sánchez-Jiménez, Ester, et al.
Publicado: (2023)

SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
por: Wang, Xiaochuan, et al.
Publicado: (2019)

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing
por: Mori, Hiroshi, et al.
Publicado: (2018)

The Dark Proteome Database
por: Perdigão, Nelson, et al.
Publicado: (2017)

Dintor: functional annotation of genomic and proteomic data
por: Weichenberger, Christian X., et al.
Publicado: (2015)

CIG-P: Circular Interaction Graph for Proteomics
por: Hobbs, Christopher K, et al.
Publicado: (2014)

ProteoModlR for functional proteomic analysis
por: Cifani, Paolo, et al.
Publicado: (2017)

Developing a powerful In Silico tool for the discovery of novel caspase-3 substrates: a preliminary screening of the human proteome
por: Ayyash, Muneef, et al.
Publicado: (2012)

Modeling of shotgun sequencing of DNA plasmids using experimental and theoretical approaches
por: Shityakov, Sergey, et al.
Publicado: (2020)

Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
por: Barbosa-Silva, Adriano, et al.
Publicado: (2008)

LabKey Server NAb: A tool for analyzing, visualizing and sharing results from neutralizing antibody assays
por: Piehler, Britt, et al.
Publicado: (2011)

MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis
por: Klepper, Kjetil, et al.
Publicado: (2013)

RegStatGel: proteomic software for identifying differentially expressed proteins based on 2D gel images
por: Li, Feng, et al.
Publicado: (2011)

3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data
por: Kuo, Tien-Chueh, et al.
Publicado: (2013)

multiplierz: an extensible API based desktop environment for proteomics data analysis
por: Parikh, Jignesh R, et al.
Publicado: (2009)

i-Tracker: For quantitative proteomics using iTRAQ™
por: Shadforth, Ian P, et al.
Publicado: (2005)

mspecLINE: bridging knowledge of human disease with the proteome
por: Handcock, Jeremy, et al.
Publicado: (2010)

A comparative proteomics resource: proteins of Arabidopsis thaliana
por: Li, Wilfred W, et al.
Publicado: (2003)

WHAM!: a web-based visualization suite for user-defined analysis of metagenomic shotgun sequencing data
por: Devlin, Joseph C., et al.
Publicado: (2018)

MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics
por: Prianichnikov, Nikita, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_rlt74lsd59m5jsnf4bq8i15k0j