VistaClara: an expression browser plug-in for Cytoscape

Summary: VistaClara is a plug-in for Cytoscape which provides a more flexible means to visualize gene and protein expression within a network context. An extended attribute browser is provided in the form of a graphical and interactive permutation matrix that resembles the heat map displays popular...

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Detalles Bibliográficos
Autores principales: Kincaid, Robert, Kuchinsky, Allan, Creech, Michael
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2530886/
https://www.ncbi.nlm.nih.gov/pubmed/18678589
http://dx.doi.org/10.1093/bioinformatics/btn368
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author Kincaid, Robert
Kuchinsky, Allan
Creech, Michael
author_facet Kincaid, Robert
Kuchinsky, Allan
Creech, Michael
author_sort Kincaid, Robert
collection PubMed
description Summary: VistaClara is a plug-in for Cytoscape which provides a more flexible means to visualize gene and protein expression within a network context. An extended attribute browser is provided in the form of a graphical and interactive permutation matrix that resembles the heat map displays popular in gene-expression analysis. This extended browser permits a variety of display options and interactions not currently available in Cytoscape. Availability: http://chianti.ucsd.edu/cyto_web/plugins/index.php Contact: robert_kincaid@agilent.com
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spelling pubmed-25308862009-02-25 VistaClara: an expression browser plug-in for Cytoscape Kincaid, Robert Kuchinsky, Allan Creech, Michael Bioinformatics Applications Note Summary: VistaClara is a plug-in for Cytoscape which provides a more flexible means to visualize gene and protein expression within a network context. An extended attribute browser is provided in the form of a graphical and interactive permutation matrix that resembles the heat map displays popular in gene-expression analysis. This extended browser permits a variety of display options and interactions not currently available in Cytoscape. Availability: http://chianti.ucsd.edu/cyto_web/plugins/index.php Contact: robert_kincaid@agilent.com Oxford University Press 2008-09-15 2008-08-04 /pmc/articles/PMC2530886/ /pubmed/18678589 http://dx.doi.org/10.1093/bioinformatics/btn368 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Kincaid, Robert
Kuchinsky, Allan
Creech, Michael
VistaClara: an expression browser plug-in for Cytoscape
title VistaClara: an expression browser plug-in for Cytoscape
title_full VistaClara: an expression browser plug-in for Cytoscape
title_fullStr VistaClara: an expression browser plug-in for Cytoscape
title_full_unstemmed VistaClara: an expression browser plug-in for Cytoscape
title_short VistaClara: an expression browser plug-in for Cytoscape
title_sort vistaclara: an expression browser plug-in for cytoscape
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2530886/
https://www.ncbi.nlm.nih.gov/pubmed/18678589
http://dx.doi.org/10.1093/bioinformatics/btn368
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AT kuchinskyallan vistaclaraanexpressionbrowserpluginforcytoscape
AT creechmichael vistaclaraanexpressionbrowserpluginforcytoscape

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