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Asmparts: assembly of biological model parts

We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in...

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Detalles Bibliográficos
Autores principales: Rodrigo, Guillermo, Carrera, Javier, Jaramillo, Alfonso
Formato: Texto
Lenguaje:English
Publicado: Springer Netherlands 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553328/
https://www.ncbi.nlm.nih.gov/pubmed/19003441
http://dx.doi.org/10.1007/s11693-008-9013-4
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author Rodrigo, Guillermo
Carrera, Javier
Jaramillo, Alfonso
author_facet Rodrigo, Guillermo
Carrera, Javier
Jaramillo, Alfonso
author_sort Rodrigo, Guillermo
collection PubMed
description We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in SBML to design transcriptional networks. Our software is open source, it works in linux and windows platforms, and it could be used to automatically produce models in a server. Our tool not only facilitates model design, but it will also help to promote the establishment of a registry of model parts.
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spelling pubmed-25533282008-11-25 Asmparts: assembly of biological model parts Rodrigo, Guillermo Carrera, Javier Jaramillo, Alfonso Syst Synth Biol Research Article We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in SBML to design transcriptional networks. Our software is open source, it works in linux and windows platforms, and it could be used to automatically produce models in a server. Our tool not only facilitates model design, but it will also help to promote the establishment of a registry of model parts. Springer Netherlands 2008-03-26 2007-12 /pmc/articles/PMC2553328/ /pubmed/19003441 http://dx.doi.org/10.1007/s11693-008-9013-4 Text en © Springer Science+Business Media B.V. 2008
spellingShingle Research Article
Rodrigo, Guillermo
Carrera, Javier
Jaramillo, Alfonso
Asmparts: assembly of biological model parts
title Asmparts: assembly of biological model parts
title_full Asmparts: assembly of biological model parts
title_fullStr Asmparts: assembly of biological model parts
title_full_unstemmed Asmparts: assembly of biological model parts
title_short Asmparts: assembly of biological model parts
title_sort asmparts: assembly of biological model parts
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553328/
https://www.ncbi.nlm.nih.gov/pubmed/19003441
http://dx.doi.org/10.1007/s11693-008-9013-4
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