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Asmparts: assembly of biological model parts
We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in...
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Formato: | Texto |
Lenguaje: | English |
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Springer Netherlands
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553328/ https://www.ncbi.nlm.nih.gov/pubmed/19003441 http://dx.doi.org/10.1007/s11693-008-9013-4 |
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author | Rodrigo, Guillermo Carrera, Javier Jaramillo, Alfonso |
author_facet | Rodrigo, Guillermo Carrera, Javier Jaramillo, Alfonso |
author_sort | Rodrigo, Guillermo |
collection | PubMed |
description | We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in SBML to design transcriptional networks. Our software is open source, it works in linux and windows platforms, and it could be used to automatically produce models in a server. Our tool not only facilitates model design, but it will also help to promote the establishment of a registry of model parts. |
format | Text |
id | pubmed-2553328 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-25533282008-11-25 Asmparts: assembly of biological model parts Rodrigo, Guillermo Carrera, Javier Jaramillo, Alfonso Syst Synth Biol Research Article We propose a new computational tool to produce models of biological systems by assembling models from biological parts. Our software not only takes advantage of modularity, but it also enforces standardisation in part characterisation by considering a model of each part. We have used model parts in SBML to design transcriptional networks. Our software is open source, it works in linux and windows platforms, and it could be used to automatically produce models in a server. Our tool not only facilitates model design, but it will also help to promote the establishment of a registry of model parts. Springer Netherlands 2008-03-26 2007-12 /pmc/articles/PMC2553328/ /pubmed/19003441 http://dx.doi.org/10.1007/s11693-008-9013-4 Text en © Springer Science+Business Media B.V. 2008 |
spellingShingle | Research Article Rodrigo, Guillermo Carrera, Javier Jaramillo, Alfonso Asmparts: assembly of biological model parts |
title | Asmparts: assembly of biological model parts |
title_full | Asmparts: assembly of biological model parts |
title_fullStr | Asmparts: assembly of biological model parts |
title_full_unstemmed | Asmparts: assembly of biological model parts |
title_short | Asmparts: assembly of biological model parts |
title_sort | asmparts: assembly of biological model parts |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553328/ https://www.ncbi.nlm.nih.gov/pubmed/19003441 http://dx.doi.org/10.1007/s11693-008-9013-4 |
work_keys_str_mv | AT rodrigoguillermo asmpartsassemblyofbiologicalmodelparts AT carrerajavier asmpartsassemblyofbiologicalmodelparts AT jaramilloalfonso asmpartsassemblyofbiologicalmodelparts |