Cargando…

Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution

BACKGROUND: In gene expression analysis, statistical tests for differential gene expression provide lists of candidate genes having, individually, a sufficiently low p-value. However, the interpretation of each single p-value within complex systems involving several interacting genes is problematic....

Descripción completa

Detalles Bibliográficos
Autores principales:	Moretti, Stefano, van Leeuwen, Danitsja, Gmuender, Hans, Bonassi, Stefano, van Delft, Joost, Kleinjans, Jos, Patrone, Fioravante, Merlo, Domenico Franco
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2008
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556684/ https://www.ncbi.nlm.nih.gov/pubmed/18764936 http://dx.doi.org/10.1186/1471-2105-9-361

Ejemplares similares

Transcriptome Analysis in Peripheral Blood of Humans Exposed to Environmental Carcinogens: A Promising New Biomarker in Environmental Health Studies
por: van Leeuwen, Danitsja M., et al.
Publicado: (2008)

Game theoretic centrality: a novel approach to prioritize disease candidate genes by combining biological networks with the Shapley value
por: Sun, Min Woo, et al.
Publicado: (2020)

An application of the Shapley value to the analysis of co-expression networks
por: Cesari, Giulia, et al.
Publicado: (2018)

The Shapley value: essays in honor of Lloyd S. Shapley
por: Roth, Alvin E
Publicado: (1988)

An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin
por: Ruiz-Aracama, Ainhoa, et al.
Publicado: (2011)

Veloities in the shapley supercluster
por: Quintana, H., et al.
Publicado: (1994)

Classification and regression trees for epidemiologic research: an air pollution example
por: Gass, Katherine, et al.
Publicado: (2014)

Imputation method for lifetime exposure assessment in air pollution epidemiologic studies
por: Beyea, Jan, et al.
Publicado: (2013)

Shapley Ratings in Brain Networks
por: Kötter, Rolf, et al.
Publicado: (2007)

On Shapley Ratings in Brain Networks
por: Musegaas, Marieke, et al.
Publicado: (2016)

The Shapley value of regression portfolios
por: Shalit, Haim
Publicado: (2020)

Opportunities for using spatial property assessment data in air pollution exposure assessments
por: Setton, Eleanor M, et al.
Publicado: (2005)

Assessing the short term impact of air pollution on mortality: a matching approach
por: Baccini, Michela, et al.
Publicado: (2017)

Air pollution exposure estimation using dispersion modelling and continuous monitoring data in a prospective birth cohort study in the Netherlands
por: Van den Hooven, Edith H, et al.
Publicado: (2012)

New insights into BaP-induced toxicity: role of major metabolites in transcriptomics and contribution to hepatocarcinogenesis
por: Souza, Terezinha, et al.
Publicado: (2015)

Human Embryonic Stem Cell Derived Hepatocyte-Like Cells as a Tool for In Vitro Hazard Assessment of Chemical Carcinogenicity
por: Yildirimman, Reha, et al.
Publicado: (2011)

Effect of Air Pollution on the Basal DNA Damage of Mother–Newborn Couples of México City
por: Valverde, Mahara, et al.
Publicado: (2023)

Inefficiencies in Residency Matching Associated with Gale–Shapley Algorithms
por: Wu, Yue, et al.
Publicado: (2021)

Cytogenetic Effects in Children Exposed to Air Pollutants: A Systematic Review and Meta-Analysis
por: Acito, Mattia, et al.
Publicado: (2022)

Interindividual variation in gene expression responses and metabolite formation in acetaminophen-exposed primary human hepatocytes
por: Jetten, Marlon J. A., et al.
Publicado: (2015)

Application of four dyes in gene expression analyses by microarrays
por: Staal, Yvonne CM, et al.
Publicado: (2005)

Dynamic Shapley value and dynamic Nash bargaining
por: W, David
Publicado: (2018)

Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells
por: Jennen, Danyel, et al.
Publicado: (2011)

Enstrom’s Expose of Air Pollution Epidemiology Problems
por: Dunn, John Dale
Publicado: (2018)

Health consequences of exposure to aircraft contaminated air and fume events: a narrative review and medical protocol for the investigation of exposed aircrew and passengers
por: Burdon, Jonathan, et al.
Publicado: (2023)

A protocol for investigation of the effects of outdoor air pollution on stroke incidence, phenotypes and survival using the South London Stroke Register
por: Maheswaran, Ravi, et al.
Publicado: (2006)

Possible relevance of pigeons as an indicator species for monitoring air pollution.
por: Schilderman, P A, et al.
Publicado: (1997)

Shapley variable importance cloud for interpretable machine learning
por: Ning, Yilin, et al.
Publicado: (2022)

Explaining a series of models by propagating Shapley values
por: Chen, Hugh, et al.
Publicado: (2022)

Transcriptome-wide analyses indicate mitochondrial responses to particulate air pollution exposure
por: Winckelmans, Ellen, et al.
Publicado: (2017)

Transcribed-ultra conserved region expression profiling from low-input total RNA
por: Scaruffi, Paola, et al.
Publicado: (2010)

Exposing medical students to expanding populations
por: Lindenthal, JJ, et al.
Publicado: (2015)

Shapley values for assessing research production and impact of schools and scholars
por: Tol, Richard S. J.
Publicado: (2011)

Shapley-Based Estimation of Company Value—Concept, Algorithms and Parameters
por: Mercik, Jacek, et al.
Publicado: (2021)

Explaining multivariate molecular diagnostic tests via Shapley values
por: Roder, Joanna, et al.
Publicado: (2021)

Airway dendritic cell maturation in children exposed to air pollution
por: Whitehouse, Abigail L., et al.
Publicado: (2020)

Testing chemical carcinogenicity by using a transcriptomics HepaRG-based model?
por: Doktorova, T. Y., et al.
Publicado: (2014)

Combining statistics from two national complex surveys to estimate injury rates per hour exposed and variance by activity in the USA
por: Lin, Tin-chi, et al.
Publicado: (2016)

Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies
por: Nguyen, Nhan, et al.
Publicado: (2021)

Explaining Multiclass Compound Activity Predictions Using Counterfactuals and Shapley Values
por: Lamens, Alec, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_t5qp0inr0l800uk5prj9rqivop