Cargando…

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

Single nucleotide polymorphism (SNP) discovery and genotyping are essential to genetic mapping. There remains a need for a simple, inexpensive platform that allows high-density SNP discovery and genotyping in large populations. Here we describe the sequencing of restriction-site associated DNA (RAD)...

Descripción completa

Detalles Bibliográficos
Autores principales:	Baird, Nathan A., Etter, Paul D., Atwood, Tressa S., Currey, Mark C., Shiver, Anthony L., Lewis, Zachary A., Selker, Eric U., Cresko, William A., Johnson, Eric A.
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2008
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2557064/ https://www.ncbi.nlm.nih.gov/pubmed/18852878 http://dx.doi.org/10.1371/journal.pone.0003376

Ejemplares similares

RAD marker microarrays enable rapid mapping of zebrafish mutations
por: Miller, Michael R, et al.
Publicado: (2007)

Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads
por: Etter, Paul D., et al.
Publicado: (2011)

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
por: Hohenlohe, Paul A., et al.
Publicado: (2010)

Rapid SNP Discovery and a RAD-Based High-Density Linkage Map in Jujube (Ziziphus Mill.)
por: Zhao, Jin, et al.
Publicado: (2014)

DNA Methylation and Normal Chromosome Behavior in Neurospora Depend on Five Components of a Histone Methyltransferase Complex, DCDC
por: Lewis, Zachary A., et al.
Publicado: (2010)

QTL Mapping of Intestinal Neutrophil Variation in Threespine Stickleback Reveals Possible Gene Targets Connecting Intestinal Inflammation and Systemic Health
por: Beck, Emily A., et al.
Publicado: (2019)

SNP Discovery for mapping alien introgressions in wheat
por: Tiwari, Vijay K, et al.
Publicado: (2014)

Genotyping by Sequencing in Almond: SNP Discovery, Linkage Mapping, and Marker Design
por: Goonetilleke, Shashi N., et al.
Publicado: (2017)

SNP discovery and association mapping in Eucalyptus pilularis (blackbutt)
por: Sexton, Timothy, et al.
Publicado: (2011)

SNP Discovery and Linkage Map Construction in Cultivated Tomato
por: Shirasawa, Kenta, et al.
Publicado: (2010)

Gene-based SNP discovery and genetic mapping in pea
por: Sindhu, Anoop, et al.
Publicado: (2014)

SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.)
por: Marrano, Annarita, et al.
Publicado: (2017)

Identification of SNP and SSR markers in eggplant using RAD tag sequencing
por: Barchi, Lorenzo, et al.
Publicado: (2011)

Identification of Laying-Related SNP Markers in Geese Using RAD Sequencing
por: Yu, ShiGang, et al.
Publicado: (2015)

De novo sequencing of sunflower genome for SNP discovery using RAD (Restriction site Associated DNA) approach
por: Pegadaraju, Venkatramana, et al.
Publicado: (2013)

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants
por: Yang, Guo-Qian, et al.
Publicado: (2016)

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L
por: Scaglione, Davide, et al.
Publicado: (2012)

A High-Density SNP Genetic Map Construction Using ddRAD-Seq and Mapping of Capsule Shattering Trait in Sesame
por: Yol, Engin, et al.
Publicado: (2021)

SNP Marker Discovery in Koala TLR Genes
por: Cui, Jian, et al.
Publicado: (2015)

DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics
por: Gauthier, Jérémy, et al.
Publicado: (2020)

Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome
por: Small, Clayton M., et al.
Publicado: (2019)

Population Genetic Divergence and Environment Influence the Gut Microbiome in Oregon Threespine Stickleback
por: Steury, Robert A., et al.
Publicado: (2019)

AFSM sequencing approach: a simple and rapid method for genome-wide SNP and methylation site discovery and genetic mapping
por: Xia, Zhiqiang, et al.
Publicado: (2014)

Sniper: improved SNP discovery by multiply mapping deep sequenced reads
por: Simola, Daniel F, et al.
Publicado: (2011)

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms
por: You, Frank M, et al.
Publicado: (2012)

Genetic diversity of loquat (Eriobotrya japonica) revealed using RAD-Seq SNP markers
por: Nagano, Yukio, et al.
Publicado: (2022)

SNP-based genetic linkage map of tobacco (Nicotiana tabacum L.) using next-generation RAD sequencing
por: Xiao, Bingguang, et al.
Publicado: (2015)

SNP-PHAGE – High throughput SNP discovery pipeline
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

CHD1 Remodels Chromatin and Influences Transient DNA Methylation at the Clock Gene frequency
por: Belden, William J., et al.
Publicado: (2011)

A High-Density SNP Map of Sunflower Derived from RAD-Sequencing Facilitating Fine-Mapping of the Rust Resistance Gene R(12)
por: Talukder, Zahirul I., et al.
Publicado: (2014)

Assessment of genetic diversity and SNP marker development within peanut germplasm in Taiwan by RAD-seq
por: Hsu, Yu-Ming, et al.
Publicado: (2022)

SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.)
por: Leonforte, Antonio, et al.
Publicado: (2013)

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals
por: Holzinger, Emily R., et al.
Publicado: (2017)

SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species
por: Oliver, Rebekah E., et al.
Publicado: (2013)

Identification of a Sex-Linked SNP Marker in the Salmon Louse (Lepeophtheirus salmonis) Using RAD Sequencing
por: Carmichael, Stephen N., et al.
Publicado: (2013)

KASPar SNP genetic map of cassava for QTL discovery of productivity traits in moderate drought stress environment in Africa
por: Ewa, Favour, et al.
Publicado: (2021)

Host genomic variation shapes gut microbiome diversity in threespine stickleback fish
por: Small, Clayton M., et al.
Publicado: (2023)

Correction: SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species
por: Oliver, Rebekah E., et al.
Publicado: (2013)

Transcriptome sequencing for SNP discovery across Cucumis melo
por: Blanca, José, et al.
Publicado: (2012)

Application of machine learning in SNP discovery
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_mp15788q203nu9r1ppl8dflqa6