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Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence

Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict...

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Detalles Bibliográficos
Autores principales: Kumar, Suresh, Carugo, Oliviero
Formato: Texto
Lenguaje:English
Publicado: Bentham Science Publishers Ltd. 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570547/
https://www.ncbi.nlm.nih.gov/pubmed/18949069
http://dx.doi.org/10.2174/1874091X00802010001
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author Kumar, Suresh
Carugo, Oliviero
author_facet Kumar, Suresh
Carugo, Oliviero
author_sort Kumar, Suresh
collection PubMed
description Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict with high accuracy disordered residues on the basis of protein sequences. It makes use of twelve prediction methods and merges their results by using least-squares optimization. A statistical survey of the Protein Data Bank is also reported, in order to know how many residues can be disordered in proteins that were crystallized and the three-dimensional structure of which was determined.
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spelling pubmed-25705472009-06-09 Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence Kumar, Suresh Carugo, Oliviero Open Biochem J Article Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict with high accuracy disordered residues on the basis of protein sequences. It makes use of twelve prediction methods and merges their results by using least-squares optimization. A statistical survey of the Protein Data Bank is also reported, in order to know how many residues can be disordered in proteins that were crystallized and the three-dimensional structure of which was determined. Bentham Science Publishers Ltd. 2008-01-18 /pmc/articles/PMC2570547/ /pubmed/18949069 http://dx.doi.org/10.2174/1874091X00802010001 Text en 2008 Bentham Science Publishers Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.5/), which permits unrestrictive use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Kumar, Suresh
Carugo, Oliviero
Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title_full Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title_fullStr Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title_full_unstemmed Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title_short Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
title_sort consensus prediction of protein conformational disorder from amino acidic sequence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570547/
https://www.ncbi.nlm.nih.gov/pubmed/18949069
http://dx.doi.org/10.2174/1874091X00802010001
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