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Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence
Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict...
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Formato: | Texto |
Lenguaje: | English |
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Bentham Science Publishers Ltd.
2008
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570547/ https://www.ncbi.nlm.nih.gov/pubmed/18949069 http://dx.doi.org/10.2174/1874091X00802010001 |
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author | Kumar, Suresh Carugo, Oliviero |
author_facet | Kumar, Suresh Carugo, Oliviero |
author_sort | Kumar, Suresh |
collection | PubMed |
description | Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict with high accuracy disordered residues on the basis of protein sequences. It makes use of twelve prediction methods and merges their results by using least-squares optimization. A statistical survey of the Protein Data Bank is also reported, in order to know how many residues can be disordered in proteins that were crystallized and the three-dimensional structure of which was determined. |
format | Text |
id | pubmed-2570547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Bentham Science Publishers Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-25705472009-06-09 Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence Kumar, Suresh Carugo, Oliviero Open Biochem J Article Predictions of protein conformational disorder are important in structural biology since they can allow the elimination of protein constructs, the three-dimensional structure of which cannot be determined since they are natively unfolded. Here a new procedure is presented that allows one to predict with high accuracy disordered residues on the basis of protein sequences. It makes use of twelve prediction methods and merges their results by using least-squares optimization. A statistical survey of the Protein Data Bank is also reported, in order to know how many residues can be disordered in proteins that were crystallized and the three-dimensional structure of which was determined. Bentham Science Publishers Ltd. 2008-01-18 /pmc/articles/PMC2570547/ /pubmed/18949069 http://dx.doi.org/10.2174/1874091X00802010001 Text en 2008 Bentham Science Publishers Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.5/), which permits unrestrictive use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Article Kumar, Suresh Carugo, Oliviero Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title | Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title_full | Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title_fullStr | Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title_full_unstemmed | Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title_short | Consensus Prediction of Protein Conformational Disorder from Amino Acidic Sequence |
title_sort | consensus prediction of protein conformational disorder from amino acidic sequence |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570547/ https://www.ncbi.nlm.nih.gov/pubmed/18949069 http://dx.doi.org/10.2174/1874091X00802010001 |
work_keys_str_mv | AT kumarsuresh consensuspredictionofproteinconformationaldisorderfromaminoacidicsequence AT carugooliviero consensuspredictionofproteinconformationaldisorderfromaminoacidicsequence |