OmicsViz: Cytoscape plug-in for visualizing omics data across species

Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different ex...

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Detalles Bibliográficos
Autores principales: Xia, Tian, Dickerson, Julie A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2572702/
https://www.ncbi.nlm.nih.gov/pubmed/18779234
http://dx.doi.org/10.1093/bioinformatics/btn473
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author Xia, Tian
Dickerson, Julie A.
author_facet Xia, Tian
Dickerson, Julie A.
author_sort Xia, Tian
collection PubMed
description Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different experimental protocols allow users to comparatively analyze the omics data. The data can also be visualized in parallel-coordinate plots. Availability: The latest version of OmicsViz with documentation, tutorial and jar files can be downloaded from http://metnet.vrac.iastate.edu/MetNet_fcmodeler.htm Contact: julied@iastate.edu
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spelling pubmed-25727022008-10-26 OmicsViz: Cytoscape plug-in for visualizing omics data across species Xia, Tian Dickerson, Julie A. Bioinformatics Applications Note Motivation: OmicsViz is a Cytoscape plug-in for mapping and visualizing large-scale omics datasets across species, including those with many-to-many mappings between homologs. This allows users to map their data onto pathways of related model organisms. Mapping schemas across species or different experimental protocols allow users to comparatively analyze the omics data. The data can also be visualized in parallel-coordinate plots. Availability: The latest version of OmicsViz with documentation, tutorial and jar files can be downloaded from http://metnet.vrac.iastate.edu/MetNet_fcmodeler.htm Contact: julied@iastate.edu Oxford University Press 2008-11-01 2008-09-08 /pmc/articles/PMC2572702/ /pubmed/18779234 http://dx.doi.org/10.1093/bioinformatics/btn473 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Xia, Tian
Dickerson, Julie A.
OmicsViz: Cytoscape plug-in for visualizing omics data across species
title OmicsViz: Cytoscape plug-in for visualizing omics data across species
title_full OmicsViz: Cytoscape plug-in for visualizing omics data across species
title_fullStr OmicsViz: Cytoscape plug-in for visualizing omics data across species
title_full_unstemmed OmicsViz: Cytoscape plug-in for visualizing omics data across species
title_short OmicsViz: Cytoscape plug-in for visualizing omics data across species
title_sort omicsviz: cytoscape plug-in for visualizing omics data across species
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2572702/
https://www.ncbi.nlm.nih.gov/pubmed/18779234
http://dx.doi.org/10.1093/bioinformatics/btn473
work_keys_str_mv AT xiatian omicsvizcytoscapepluginforvisualizingomicsdataacrossspecies
AT dickersonjuliea omicsvizcytoscapepluginforvisualizingomicsdataacrossspecies

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