Profile Comparer: a program for scoring and aligning profile hidden Markov models

Summary: Profile Comparer (PRC) is a stand-alone program for scoring and aligning profile hidden Markov models (HMMs) of protein families. PRC can read models produced by SAM and HMMER, two popular profile HMM packages, as well as PSI-BLAST checkpoint files. This application note provides a brief de...

Descripción completa

Detalles Bibliográficos
Autor principal: Madera, Martin
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2579712/
https://www.ncbi.nlm.nih.gov/pubmed/18845584
http://dx.doi.org/10.1093/bioinformatics/btn504
_version_ 1782160589260324864
author Madera, Martin
author_facet Madera, Martin
author_sort Madera, Martin
collection PubMed
description Summary: Profile Comparer (PRC) is a stand-alone program for scoring and aligning profile hidden Markov models (HMMs) of protein families. PRC can read models produced by SAM and HMMER, two popular profile HMM packages, as well as PSI-BLAST checkpoint files. This application note provides a brief description of the profile–profile algorithm used by PRC. Availability: The C source code licensed under the GNU General Public Licence and Linux and Mac OS X binaries can be downloaded from http://supfam.org/PRC. Contact: martin.madera@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online.
format Text
id pubmed-2579712
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-25797122009-02-25 Profile Comparer: a program for scoring and aligning profile hidden Markov models Madera, Martin Bioinformatics Applications Note Summary: Profile Comparer (PRC) is a stand-alone program for scoring and aligning profile hidden Markov models (HMMs) of protein families. PRC can read models produced by SAM and HMMER, two popular profile HMM packages, as well as PSI-BLAST checkpoint files. This application note provides a brief description of the profile–profile algorithm used by PRC. Availability: The C source code licensed under the GNU General Public Licence and Linux and Mac OS X binaries can be downloaded from http://supfam.org/PRC. Contact: martin.madera@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2008-11-15 2008-10-09 /pmc/articles/PMC2579712/ /pubmed/18845584 http://dx.doi.org/10.1093/bioinformatics/btn504 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Madera, Martin
Profile Comparer: a program for scoring and aligning profile hidden Markov models
title Profile Comparer: a program for scoring and aligning profile hidden Markov models
title_full Profile Comparer: a program for scoring and aligning profile hidden Markov models
title_fullStr Profile Comparer: a program for scoring and aligning profile hidden Markov models
title_full_unstemmed Profile Comparer: a program for scoring and aligning profile hidden Markov models
title_short Profile Comparer: a program for scoring and aligning profile hidden Markov models
title_sort profile comparer: a program for scoring and aligning profile hidden markov models
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2579712/
https://www.ncbi.nlm.nih.gov/pubmed/18845584
http://dx.doi.org/10.1093/bioinformatics/btn504
work_keys_str_mv AT maderamartin profilecompareraprogramforscoringandaligningprofilehiddenmarkovmodels

Ejemplares similares