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Accelerating the annotation of sparse named entities by dynamic sentence selection

BACKGROUND: Previous studies of named entity recognition have shown that a reasonable level of recognition accuracy can be achieved by using machine learning models such as conditional random fields or support vector machines. However, the lack of training data (i.e. annotated corpora) makes it diff...

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Autores principales: Tsuruoka, Yoshimasa, Tsujii, Jun'ichi, Ananiadou, Sophia
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2586757/
https://www.ncbi.nlm.nih.gov/pubmed/19025694
http://dx.doi.org/10.1186/1471-2105-9-S11-S8
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author Tsuruoka, Yoshimasa
Tsujii, Jun'ichi
Ananiadou, Sophia
author_facet Tsuruoka, Yoshimasa
Tsujii, Jun'ichi
Ananiadou, Sophia
author_sort Tsuruoka, Yoshimasa
collection PubMed
description BACKGROUND: Previous studies of named entity recognition have shown that a reasonable level of recognition accuracy can be achieved by using machine learning models such as conditional random fields or support vector machines. However, the lack of training data (i.e. annotated corpora) makes it difficult for machine learning-based named entity recognizers to be used in building practical information extraction systems. RESULTS: This paper presents an active learning-like framework for reducing the human effort required to create named entity annotations in a corpus. In this framework, the annotation work is performed as an iterative and interactive process between the human annotator and a probabilistic named entity tagger. Unlike active learning, our framework aims to annotate all occurrences of the target named entities in the given corpus, so that the resulting annotations are free from the sampling bias which is inevitable in active learning approaches. CONCLUSION: We evaluate our framework by simulating the annotation process using two named entity corpora and show that our approach can reduce the number of sentences which need to be examined by the human annotator. The cost reduction achieved by the framework could be drastic when the target named entities are sparse.
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spelling pubmed-25867572008-11-26 Accelerating the annotation of sparse named entities by dynamic sentence selection Tsuruoka, Yoshimasa Tsujii, Jun'ichi Ananiadou, Sophia BMC Bioinformatics Research BACKGROUND: Previous studies of named entity recognition have shown that a reasonable level of recognition accuracy can be achieved by using machine learning models such as conditional random fields or support vector machines. However, the lack of training data (i.e. annotated corpora) makes it difficult for machine learning-based named entity recognizers to be used in building practical information extraction systems. RESULTS: This paper presents an active learning-like framework for reducing the human effort required to create named entity annotations in a corpus. In this framework, the annotation work is performed as an iterative and interactive process between the human annotator and a probabilistic named entity tagger. Unlike active learning, our framework aims to annotate all occurrences of the target named entities in the given corpus, so that the resulting annotations are free from the sampling bias which is inevitable in active learning approaches. CONCLUSION: We evaluate our framework by simulating the annotation process using two named entity corpora and show that our approach can reduce the number of sentences which need to be examined by the human annotator. The cost reduction achieved by the framework could be drastic when the target named entities are sparse. BioMed Central 2008-11-19 /pmc/articles/PMC2586757/ /pubmed/19025694 http://dx.doi.org/10.1186/1471-2105-9-S11-S8 Text en Copyright © 2008 Tsuruoka et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Tsuruoka, Yoshimasa
Tsujii, Jun'ichi
Ananiadou, Sophia
Accelerating the annotation of sparse named entities by dynamic sentence selection
title Accelerating the annotation of sparse named entities by dynamic sentence selection
title_full Accelerating the annotation of sparse named entities by dynamic sentence selection
title_fullStr Accelerating the annotation of sparse named entities by dynamic sentence selection
title_full_unstemmed Accelerating the annotation of sparse named entities by dynamic sentence selection
title_short Accelerating the annotation of sparse named entities by dynamic sentence selection
title_sort accelerating the annotation of sparse named entities by dynamic sentence selection
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2586757/
https://www.ncbi.nlm.nih.gov/pubmed/19025694
http://dx.doi.org/10.1186/1471-2105-9-S11-S8
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