NetGrep: fast network schema searches in interactomes

NetGrep () is a system for searching protein interaction networks for matches to user-supplied 'network schemas'. Each schema consists of descriptions of proteins (for example, their molecular functions or putative domains) along with the desired topology and types of interactions among th...

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Detalles Bibliográficos
Autores principales: Banks, Eric, Nabieva, Elena, Peterson, Ryan, Singh, Mona
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2592716/
https://www.ncbi.nlm.nih.gov/pubmed/18801179
http://dx.doi.org/10.1186/gb-2008-9-9-r138
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author Banks, Eric
Nabieva, Elena
Peterson, Ryan
Singh, Mona
author_facet Banks, Eric
Nabieva, Elena
Peterson, Ryan
Singh, Mona
author_sort Banks, Eric
collection PubMed
description NetGrep () is a system for searching protein interaction networks for matches to user-supplied 'network schemas'. Each schema consists of descriptions of proteins (for example, their molecular functions or putative domains) along with the desired topology and types of interactions among them. Schemas can thus describe domain-domain interactions, signaling and regulatory pathways, or more complex network patterns. NetGrep provides an advanced graphical interface for specifying schemas and fast algorithms for extracting their matches.
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spelling pubmed-25927162008-12-03 NetGrep: fast network schema searches in interactomes Banks, Eric Nabieva, Elena Peterson, Ryan Singh, Mona Genome Biol Software NetGrep () is a system for searching protein interaction networks for matches to user-supplied 'network schemas'. Each schema consists of descriptions of proteins (for example, their molecular functions or putative domains) along with the desired topology and types of interactions among them. Schemas can thus describe domain-domain interactions, signaling and regulatory pathways, or more complex network patterns. NetGrep provides an advanced graphical interface for specifying schemas and fast algorithms for extracting their matches. BioMed Central 2008 2008-09-18 /pmc/articles/PMC2592716/ /pubmed/18801179 http://dx.doi.org/10.1186/gb-2008-9-9-r138 Text en Copyright © 2008 Banks et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Banks, Eric
Nabieva, Elena
Peterson, Ryan
Singh, Mona
NetGrep: fast network schema searches in interactomes
title NetGrep: fast network schema searches in interactomes
title_full NetGrep: fast network schema searches in interactomes
title_fullStr NetGrep: fast network schema searches in interactomes
title_full_unstemmed NetGrep: fast network schema searches in interactomes
title_short NetGrep: fast network schema searches in interactomes
title_sort netgrep: fast network schema searches in interactomes
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2592716/
https://www.ncbi.nlm.nih.gov/pubmed/18801179
http://dx.doi.org/10.1186/gb-2008-9-9-r138
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AT singhmona netgrepfastnetworkschemasearchesininteractomes

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