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Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma

PURPOSE: Coding variants in the optineurin gene (OPTN, GLC1E) have been reported to play a role in primary open-angle glaucoma (POAG) in various populations. This study investigated the role of OPTN sequence variants in patients with POAG in Ghana (West Africa). METHODS: This is a case-control study...

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Autores principales: Liu, Yutao, Akafo, Stephen, Santiago-Turla, Cecile, Cohen, Claudia S., LaRocque-Abramson, Karen R., Qin, Xuejun, Herndon, Leon W., Challa, Pratap, Schmidt, Silke, Hauser, Michael A., Allingham, R. Rand
Formato: Texto
Lenguaje:English
Publicado: Molecular Vision 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605106/
https://www.ncbi.nlm.nih.gov/pubmed/19096531
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author Liu, Yutao
Akafo, Stephen
Santiago-Turla, Cecile
Cohen, Claudia S.
LaRocque-Abramson, Karen R.
Qin, Xuejun
Herndon, Leon W.
Challa, Pratap
Schmidt, Silke
Hauser, Michael A.
Allingham, R. Rand
author_facet Liu, Yutao
Akafo, Stephen
Santiago-Turla, Cecile
Cohen, Claudia S.
LaRocque-Abramson, Karen R.
Qin, Xuejun
Herndon, Leon W.
Challa, Pratap
Schmidt, Silke
Hauser, Michael A.
Allingham, R. Rand
author_sort Liu, Yutao
collection PubMed
description PURPOSE: Coding variants in the optineurin gene (OPTN, GLC1E) have been reported to play a role in primary open-angle glaucoma (POAG) in various populations. This study investigated the role of OPTN sequence variants in patients with POAG in Ghana (West Africa). METHODS: This is a case-control study of unrelated Ghanaian POAG cases and non-glaucomatous controls. Ascertainment criteria for POAG included the presence of glaucomatous optic nerve neuropathy, associated visual field loss, and elevated intraocular pressure (IOP) in both eyes, all in the absence of secondary causes of glaucoma. Controls had normal optic nerves, visual fields, and IOP. All the coding exons of OPTN were polymerase chain reaction (PCR) amplified and sequenced in all 140 cases and 130 controls using an ABI 3730 DNA analyzer. RESULTS: All the coding exons of OPTN were sequenced in 140 POAG patients and 130 controls. Several coding variants were identified including M98K, A134A, V147L, P292P, A301G, S321S, and E322K. Three coding variants (V147L, P292P, and A301G) have not been reported previously. There were no significant differences on the frequencies of all the identified variants between POAG cases and controls in this population. CONCLUSIONS: This is the first comprehensive study of OPTN in a single West African population. Our results suggest that coding variants in OPTN may not contribute to the risk for POAG in persons of West African descent.
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spelling pubmed-26051062008-12-18 Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma Liu, Yutao Akafo, Stephen Santiago-Turla, Cecile Cohen, Claudia S. LaRocque-Abramson, Karen R. Qin, Xuejun Herndon, Leon W. Challa, Pratap Schmidt, Silke Hauser, Michael A. Allingham, R. Rand Mol Vis Research Article PURPOSE: Coding variants in the optineurin gene (OPTN, GLC1E) have been reported to play a role in primary open-angle glaucoma (POAG) in various populations. This study investigated the role of OPTN sequence variants in patients with POAG in Ghana (West Africa). METHODS: This is a case-control study of unrelated Ghanaian POAG cases and non-glaucomatous controls. Ascertainment criteria for POAG included the presence of glaucomatous optic nerve neuropathy, associated visual field loss, and elevated intraocular pressure (IOP) in both eyes, all in the absence of secondary causes of glaucoma. Controls had normal optic nerves, visual fields, and IOP. All the coding exons of OPTN were polymerase chain reaction (PCR) amplified and sequenced in all 140 cases and 130 controls using an ABI 3730 DNA analyzer. RESULTS: All the coding exons of OPTN were sequenced in 140 POAG patients and 130 controls. Several coding variants were identified including M98K, A134A, V147L, P292P, A301G, S321S, and E322K. Three coding variants (V147L, P292P, and A301G) have not been reported previously. There were no significant differences on the frequencies of all the identified variants between POAG cases and controls in this population. CONCLUSIONS: This is the first comprehensive study of OPTN in a single West African population. Our results suggest that coding variants in OPTN may not contribute to the risk for POAG in persons of West African descent. Molecular Vision 2008-12-18 /pmc/articles/PMC2605106/ /pubmed/19096531 Text en http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liu, Yutao
Akafo, Stephen
Santiago-Turla, Cecile
Cohen, Claudia S.
LaRocque-Abramson, Karen R.
Qin, Xuejun
Herndon, Leon W.
Challa, Pratap
Schmidt, Silke
Hauser, Michael A.
Allingham, R. Rand
Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title_full Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title_fullStr Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title_full_unstemmed Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title_short Optineurin coding variants in Ghanaian patients with primary open-angle glaucoma
title_sort optineurin coding variants in ghanaian patients with primary open-angle glaucoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605106/
https://www.ncbi.nlm.nih.gov/pubmed/19096531
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