DNAPlotter: circular and linear interactive genome visualization

Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features...

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Detalles Bibliográficos
Autores principales: Carver, Tim, Thomson, Nick, Bleasby, Alan, Berriman, Matthew, Parkhill, Julian
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612626/
https://www.ncbi.nlm.nih.gov/pubmed/18990721
http://dx.doi.org/10.1093/bioinformatics/btn578
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author Carver, Tim
Thomson, Nick
Bleasby, Alan
Berriman, Matthew
Parkhill, Julian
author_facet Carver, Tim
Thomson, Nick
Bleasby, Alan
Berriman, Matthew
Parkhill, Julian
author_sort Carver, Tim
collection PubMed
description Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/ Contact: artemis@sanger.ac.uk
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spelling pubmed-26126262009-02-25 DNAPlotter: circular and linear interactive genome visualization Carver, Tim Thomson, Nick Bleasby, Alan Berriman, Matthew Parkhill, Julian Bioinformatics Applications Note Summary: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. Availability: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/ Contact: artemis@sanger.ac.uk Oxford University Press 2009-01-01 2008-11-05 /pmc/articles/PMC2612626/ /pubmed/18990721 http://dx.doi.org/10.1093/bioinformatics/btn578 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Carver, Tim
Thomson, Nick
Bleasby, Alan
Berriman, Matthew
Parkhill, Julian
DNAPlotter: circular and linear interactive genome visualization
title DNAPlotter: circular and linear interactive genome visualization
title_full DNAPlotter: circular and linear interactive genome visualization
title_fullStr DNAPlotter: circular and linear interactive genome visualization
title_full_unstemmed DNAPlotter: circular and linear interactive genome visualization
title_short DNAPlotter: circular and linear interactive genome visualization
title_sort dnaplotter: circular and linear interactive genome visualization
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612626/
https://www.ncbi.nlm.nih.gov/pubmed/18990721
http://dx.doi.org/10.1093/bioinformatics/btn578
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AT berrimanmatthew dnaplottercircularandlinearinteractivegenomevisualization
AT parkhilljulian dnaplottercircularandlinearinteractivegenomevisualization

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