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Linkage analysis of high myopia susceptibility locus in 26 families

PURPOSE: We conducted a linkage analysis in high myopia families to replicate suggestive results from chromosome 7q36 using a model of autosomal dominant inheritance and genetic heterogeneity. We also performed a genome-wide scan to identify novel loci. METHODS: Twenty-six families, with at least tw...

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Autores principales: Paget, Sandrine, Julia, Sophie, Vitezica, Zulma G., Soler, Vincent, Malecaze, François, Calvas, Patrick
Formato: Texto
Lenguaje:English
Publicado: Molecular Vision 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2613077/
https://www.ncbi.nlm.nih.gov/pubmed/19122830
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author Paget, Sandrine
Julia, Sophie
Vitezica, Zulma G.
Soler, Vincent
Malecaze, François
Calvas, Patrick
author_facet Paget, Sandrine
Julia, Sophie
Vitezica, Zulma G.
Soler, Vincent
Malecaze, François
Calvas, Patrick
author_sort Paget, Sandrine
collection PubMed
description PURPOSE: We conducted a linkage analysis in high myopia families to replicate suggestive results from chromosome 7q36 using a model of autosomal dominant inheritance and genetic heterogeneity. We also performed a genome-wide scan to identify novel loci. METHODS: Twenty-six families, with at least two high-myopic subjects (ie. refractive value in the less affected eye of −5 diopters) in each family, were included. Phenotypic examination included standard autorefractometry, ultrasonographic eye length measurement, and clinical confirmation of the non-syndromic character of the refractive disorder. Nine families were collected de novo including 136 available members of whom 34 were highly myopic subjects. Twenty new subjects were added in 5 of the 17 remaining families. A total of 233 subjects were submitted to a genome scan using ABI linkage mapping set LMSv2-MD-10, additional markers in all regions where preliminary LOD scores were greater than 1.5 were used. Multipoint parametric and non-parametric analyses were conducted with the software packages Genehunter 2.0 and Merlin 1.0.1. Two autosomal recessive, two autosomal dominant, and four autosomal additive models were used in the parametric linkage analyses. RESULTS: No linkage was found using the subset of nine newly collected families. Study of the entire population of 26 families with a parametric model did not yield a significant LOD score (>3), even for the previously suggestive locus on 7q36. A non-parametric model demonstrated significant linkage to chromosome 7p15 in the entire population (Z-NPL=4.07, p=0.00002). The interval is 7.81 centiMorgans (cM) between markers D7S2458 and D7S2515. CONCLUSIONS: The significant interval reported here needs confirmation in other cohorts. Among possible susceptibility genes in the interval, certain candidates are likely to be involved in eye growth and development.
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spelling pubmed-26130772009-01-02 Linkage analysis of high myopia susceptibility locus in 26 families Paget, Sandrine Julia, Sophie Vitezica, Zulma G. Soler, Vincent Malecaze, François Calvas, Patrick Mol Vis Research Article PURPOSE: We conducted a linkage analysis in high myopia families to replicate suggestive results from chromosome 7q36 using a model of autosomal dominant inheritance and genetic heterogeneity. We also performed a genome-wide scan to identify novel loci. METHODS: Twenty-six families, with at least two high-myopic subjects (ie. refractive value in the less affected eye of −5 diopters) in each family, were included. Phenotypic examination included standard autorefractometry, ultrasonographic eye length measurement, and clinical confirmation of the non-syndromic character of the refractive disorder. Nine families were collected de novo including 136 available members of whom 34 were highly myopic subjects. Twenty new subjects were added in 5 of the 17 remaining families. A total of 233 subjects were submitted to a genome scan using ABI linkage mapping set LMSv2-MD-10, additional markers in all regions where preliminary LOD scores were greater than 1.5 were used. Multipoint parametric and non-parametric analyses were conducted with the software packages Genehunter 2.0 and Merlin 1.0.1. Two autosomal recessive, two autosomal dominant, and four autosomal additive models were used in the parametric linkage analyses. RESULTS: No linkage was found using the subset of nine newly collected families. Study of the entire population of 26 families with a parametric model did not yield a significant LOD score (>3), even for the previously suggestive locus on 7q36. A non-parametric model demonstrated significant linkage to chromosome 7p15 in the entire population (Z-NPL=4.07, p=0.00002). The interval is 7.81 centiMorgans (cM) between markers D7S2458 and D7S2515. CONCLUSIONS: The significant interval reported here needs confirmation in other cohorts. Among possible susceptibility genes in the interval, certain candidates are likely to be involved in eye growth and development. Molecular Vision 2008-12-30 /pmc/articles/PMC2613077/ /pubmed/19122830 Text en http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Paget, Sandrine
Julia, Sophie
Vitezica, Zulma G.
Soler, Vincent
Malecaze, François
Calvas, Patrick
Linkage analysis of high myopia susceptibility locus in 26 families
title Linkage analysis of high myopia susceptibility locus in 26 families
title_full Linkage analysis of high myopia susceptibility locus in 26 families
title_fullStr Linkage analysis of high myopia susceptibility locus in 26 families
title_full_unstemmed Linkage analysis of high myopia susceptibility locus in 26 families
title_short Linkage analysis of high myopia susceptibility locus in 26 families
title_sort linkage analysis of high myopia susceptibility locus in 26 families
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2613077/
https://www.ncbi.nlm.nih.gov/pubmed/19122830
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