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ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets

ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics, including microarray data storage, quality assessments, data visualization, gene annotation retrieval, statistical tests, genomic sequence retrieval and motif analysis. It uses...

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Detalles Bibliográficos
Autores principales: Killion, Patrick J, Iyer, Vishwanath R
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614491/
https://www.ncbi.nlm.nih.gov/pubmed/19014503
http://dx.doi.org/10.1186/gb-2008-9-11-r159
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author Killion, Patrick J
Iyer, Vishwanath R
author_facet Killion, Patrick J
Iyer, Vishwanath R
author_sort Killion, Patrick J
collection PubMed
description ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics, including microarray data storage, quality assessments, data visualization, gene annotation retrieval, statistical tests, genomic sequence retrieval and motif analysis. It uses a client-server architecture based on open source components, provides graphical, command-line, and programmatic access to all needed resources, and is extensible by virtue of a documented application programming interface. ArrayPlex is available at .
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spelling pubmed-26144912009-01-08 ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets Killion, Patrick J Iyer, Vishwanath R Genome Biol Software ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics, including microarray data storage, quality assessments, data visualization, gene annotation retrieval, statistical tests, genomic sequence retrieval and motif analysis. It uses a client-server architecture based on open source components, provides graphical, command-line, and programmatic access to all needed resources, and is extensible by virtue of a documented application programming interface. ArrayPlex is available at . BioMed Central 2008 2008-11-12 /pmc/articles/PMC2614491/ /pubmed/19014503 http://dx.doi.org/10.1186/gb-2008-9-11-r159 Text en Copyright © 2008 Killion and Iyer; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Killion, Patrick J
Iyer, Vishwanath R
ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title_full ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title_fullStr ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title_full_unstemmed ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title_short ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
title_sort arrayplex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614491/
https://www.ncbi.nlm.nih.gov/pubmed/19014503
http://dx.doi.org/10.1186/gb-2008-9-11-r159
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