SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and ×86/SSE2

BACKGROUND: We present swps3, a vectorized implementation of the Smith-Waterman local alignment algorithm optimized for both the Cell/BE and ×86 architectures. The paper describes swps3 and compares its performances with several other implementations. FINDINGS: Our benchmarking results show that swp...

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Detalles Bibliográficos
Autores principales: Szalkowski, Adam, Ledergerber, Christian, Krähenbühl, Philipp, Dessimoz, Christophe
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2615776/
https://www.ncbi.nlm.nih.gov/pubmed/18959793
http://dx.doi.org/10.1186/1756-0500-1-107

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2615776/
https://www.ncbi.nlm.nih.gov/pubmed/18959793
http://dx.doi.org/10.1186/1756-0500-1-107

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