Cargando…

Synthetic control of a fitness tradeoff in yeast nitrogen metabolism

BACKGROUND: Microbial communities are involved in many processes relevant to industrial and medical biotechnology, such as the formation of biofilms, lignocellulosic degradation, and hydrogen production. The manipulation of synthetic and natural microbial communities and their underlying ecological...

Descripción completa

Detalles Bibliográficos
Autores principales: Bayer, Travis S, Hoff, Kevin G, Beisel, Chase L, Lee, Jack J, Smolke, Christina D
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631470/
https://www.ncbi.nlm.nih.gov/pubmed/19118500
http://dx.doi.org/10.1186/1754-1611-3-1
_version_ 1782163926798041088
author Bayer, Travis S
Hoff, Kevin G
Beisel, Chase L
Lee, Jack J
Smolke, Christina D
author_facet Bayer, Travis S
Hoff, Kevin G
Beisel, Chase L
Lee, Jack J
Smolke, Christina D
author_sort Bayer, Travis S
collection PubMed
description BACKGROUND: Microbial communities are involved in many processes relevant to industrial and medical biotechnology, such as the formation of biofilms, lignocellulosic degradation, and hydrogen production. The manipulation of synthetic and natural microbial communities and their underlying ecological parameters, such as fitness, evolvability, and variation, is an increasingly important area of research for synthetic biology. RESULTS: Here, we explored how synthetic control of an endogenous circuit can be used to regulate a tradeoff between fitness in resource abundant and resource limited environments in a population of Saccharomyces cerevisiae. We found that noise in the expression of a key enzyme in ammonia assimilation, Gdh1p, mediated a tradeoff between growth in low nitrogen environments and stress resistance in high ammonia environments. We implemented synthetic control of an endogenous Gdh1p regulatory network to construct an engineered strain in which the fitness of the population was tunable in response to an exogenously-added small molecule across a range of ammonia environments. CONCLUSION: The ability to tune fitness and biological tradeoffs will be important components of future efforts to engineer microbial communities.
format Text
id pubmed-2631470
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-26314702009-01-28 Synthetic control of a fitness tradeoff in yeast nitrogen metabolism Bayer, Travis S Hoff, Kevin G Beisel, Chase L Lee, Jack J Smolke, Christina D J Biol Eng Research BACKGROUND: Microbial communities are involved in many processes relevant to industrial and medical biotechnology, such as the formation of biofilms, lignocellulosic degradation, and hydrogen production. The manipulation of synthetic and natural microbial communities and their underlying ecological parameters, such as fitness, evolvability, and variation, is an increasingly important area of research for synthetic biology. RESULTS: Here, we explored how synthetic control of an endogenous circuit can be used to regulate a tradeoff between fitness in resource abundant and resource limited environments in a population of Saccharomyces cerevisiae. We found that noise in the expression of a key enzyme in ammonia assimilation, Gdh1p, mediated a tradeoff between growth in low nitrogen environments and stress resistance in high ammonia environments. We implemented synthetic control of an endogenous Gdh1p regulatory network to construct an engineered strain in which the fitness of the population was tunable in response to an exogenously-added small molecule across a range of ammonia environments. CONCLUSION: The ability to tune fitness and biological tradeoffs will be important components of future efforts to engineer microbial communities. BioMed Central 2009-01-02 /pmc/articles/PMC2631470/ /pubmed/19118500 http://dx.doi.org/10.1186/1754-1611-3-1 Text en Copyright © 2009 Bayer et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Bayer, Travis S
Hoff, Kevin G
Beisel, Chase L
Lee, Jack J
Smolke, Christina D
Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title_full Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title_fullStr Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title_full_unstemmed Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title_short Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
title_sort synthetic control of a fitness tradeoff in yeast nitrogen metabolism
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631470/
https://www.ncbi.nlm.nih.gov/pubmed/19118500
http://dx.doi.org/10.1186/1754-1611-3-1
work_keys_str_mv AT bayertraviss syntheticcontrolofafitnesstradeoffinyeastnitrogenmetabolism
AT hoffkeving syntheticcontrolofafitnesstradeoffinyeastnitrogenmetabolism
AT beiselchasel syntheticcontrolofafitnesstradeoffinyeastnitrogenmetabolism
AT leejackj syntheticcontrolofafitnesstradeoffinyeastnitrogenmetabolism
AT smolkechristinad syntheticcontrolofafitnesstradeoffinyeastnitrogenmetabolism