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DDESC: Dragon database for exploration of sodium channels in human

BACKGROUND: Sodium channels are heteromultimeric, integral membrane proteins that belong to a superfamily of ion channels. The mutations in genes encoding for sodium channel proteins have been linked with several inherited genetic disorders such as febrile epilepsy, Brugada syndrome, ventricular fib...

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Autores principales: Sagar, Sunil, Kaur, Mandeep, Dawe, Adam, Seshadri, Sundararajan Vijayaraghava, Christoffels, Alan, Schaefer, Ulf, Radovanovic, Aleksandar, Bajic, Vladimir B
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631582/
https://www.ncbi.nlm.nih.gov/pubmed/19099596
http://dx.doi.org/10.1186/1471-2164-9-622
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author Sagar, Sunil
Kaur, Mandeep
Dawe, Adam
Seshadri, Sundararajan Vijayaraghava
Christoffels, Alan
Schaefer, Ulf
Radovanovic, Aleksandar
Bajic, Vladimir B
author_facet Sagar, Sunil
Kaur, Mandeep
Dawe, Adam
Seshadri, Sundararajan Vijayaraghava
Christoffels, Alan
Schaefer, Ulf
Radovanovic, Aleksandar
Bajic, Vladimir B
author_sort Sagar, Sunil
collection PubMed
description BACKGROUND: Sodium channels are heteromultimeric, integral membrane proteins that belong to a superfamily of ion channels. The mutations in genes encoding for sodium channel proteins have been linked with several inherited genetic disorders such as febrile epilepsy, Brugada syndrome, ventricular fibrillation, long QT syndrome, or channelopathy associated insensitivity to pain. In spite of these significant effects that sodium channel proteins/genes could have on human health, there is no publicly available resource focused on sodium channels that would support exploration of the sodium channel related information. RESULTS: We report here Dragon Database for Exploration of Sodium Channels in Human (DDESC), which provides comprehensive information related to sodium channels regarding different entities, such as "genes and proteins", "metabolites and enzymes", "toxins", "chemicals with pharmacological effects", "disease concepts", "human anatomy", "pathways and pathway reactions" and their potential links. DDESC is compiled based on text- and data-mining. It allows users to explore potential associations between different entities related to sodium channels in human, as well as to automatically generate novel hypotheses. CONCLUSION: DDESC is first publicly available resource where the information related to sodium channels in human can be explored at different levels. This database is freely accessible for academic and non-profit users via the worldwide web .
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spelling pubmed-26315822009-01-28 DDESC: Dragon database for exploration of sodium channels in human Sagar, Sunil Kaur, Mandeep Dawe, Adam Seshadri, Sundararajan Vijayaraghava Christoffels, Alan Schaefer, Ulf Radovanovic, Aleksandar Bajic, Vladimir B BMC Genomics Database BACKGROUND: Sodium channels are heteromultimeric, integral membrane proteins that belong to a superfamily of ion channels. The mutations in genes encoding for sodium channel proteins have been linked with several inherited genetic disorders such as febrile epilepsy, Brugada syndrome, ventricular fibrillation, long QT syndrome, or channelopathy associated insensitivity to pain. In spite of these significant effects that sodium channel proteins/genes could have on human health, there is no publicly available resource focused on sodium channels that would support exploration of the sodium channel related information. RESULTS: We report here Dragon Database for Exploration of Sodium Channels in Human (DDESC), which provides comprehensive information related to sodium channels regarding different entities, such as "genes and proteins", "metabolites and enzymes", "toxins", "chemicals with pharmacological effects", "disease concepts", "human anatomy", "pathways and pathway reactions" and their potential links. DDESC is compiled based on text- and data-mining. It allows users to explore potential associations between different entities related to sodium channels in human, as well as to automatically generate novel hypotheses. CONCLUSION: DDESC is first publicly available resource where the information related to sodium channels in human can be explored at different levels. This database is freely accessible for academic and non-profit users via the worldwide web . BioMed Central 2008-12-20 /pmc/articles/PMC2631582/ /pubmed/19099596 http://dx.doi.org/10.1186/1471-2164-9-622 Text en Copyright © 2008 Sagar et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database
Sagar, Sunil
Kaur, Mandeep
Dawe, Adam
Seshadri, Sundararajan Vijayaraghava
Christoffels, Alan
Schaefer, Ulf
Radovanovic, Aleksandar
Bajic, Vladimir B
DDESC: Dragon database for exploration of sodium channels in human
title DDESC: Dragon database for exploration of sodium channels in human
title_full DDESC: Dragon database for exploration of sodium channels in human
title_fullStr DDESC: Dragon database for exploration of sodium channels in human
title_full_unstemmed DDESC: Dragon database for exploration of sodium channels in human
title_short DDESC: Dragon database for exploration of sodium channels in human
title_sort ddesc: dragon database for exploration of sodium channels in human
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631582/
https://www.ncbi.nlm.nih.gov/pubmed/19099596
http://dx.doi.org/10.1186/1471-2164-9-622
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