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On vital aid: the why, what and how of validation

Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such tech­niq...

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Detalles Bibliográficos
Autor principal: Kleywegt, Gerard J.
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631629/
https://www.ncbi.nlm.nih.gov/pubmed/19171968
http://dx.doi.org/10.1107/S090744490900081X
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author Kleywegt, Gerard J.
author_facet Kleywegt, Gerard J.
author_sort Kleywegt, Gerard J.
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description Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such tech­niques may be used a posteriori to assess the (relative) merits of a model by potential users. Weak validation methods and statistics assess how well a model reproduces the information that was used in its construction (i.e. experimental data and prior knowledge). Strong methods and statistics, on the other hand, test how well a model predicts data or information that were not used in the structure-determination process. These may be data that were excluded from the process on purpose, general knowledge about macromolecular structure, information about the biological role and biochemical activity of the molecule under study or its mutants or complexes and predictions that are based on the model and that can be tested experimentally.
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spelling pubmed-26316292009-03-05 On vital aid: the why, what and how of validation Kleywegt, Gerard J. Acta Crystallogr D Biol Crystallogr Research Papers Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such tech­niques may be used a posteriori to assess the (relative) merits of a model by potential users. Weak validation methods and statistics assess how well a model reproduces the information that was used in its construction (i.e. experimental data and prior knowledge). Strong methods and statistics, on the other hand, test how well a model predicts data or information that were not used in the structure-determination process. These may be data that were excluded from the process on purpose, general knowledge about macromolecular structure, information about the biological role and biochemical activity of the molecule under study or its mutants or complexes and predictions that are based on the model and that can be tested experimentally. International Union of Crystallography 2009-02-01 2009-01-20 /pmc/articles/PMC2631629/ /pubmed/19171968 http://dx.doi.org/10.1107/S090744490900081X Text en © Kleywegt 2009 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Kleywegt, Gerard J.
On vital aid: the why, what and how of validation
title On vital aid: the why, what and how of validation
title_full On vital aid: the why, what and how of validation
title_fullStr On vital aid: the why, what and how of validation
title_full_unstemmed On vital aid: the why, what and how of validation
title_short On vital aid: the why, what and how of validation
title_sort on vital aid: the why, what and how of validation
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631629/
https://www.ncbi.nlm.nih.gov/pubmed/19171968
http://dx.doi.org/10.1107/S090744490900081X
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