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On vital aid: the why, what and how of validation
Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such techniq...
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631629/ https://www.ncbi.nlm.nih.gov/pubmed/19171968 http://dx.doi.org/10.1107/S090744490900081X |
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author | Kleywegt, Gerard J. |
author_facet | Kleywegt, Gerard J. |
author_sort | Kleywegt, Gerard J. |
collection | PubMed |
description | Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such techniques may be used a posteriori to assess the (relative) merits of a model by potential users. Weak validation methods and statistics assess how well a model reproduces the information that was used in its construction (i.e. experimental data and prior knowledge). Strong methods and statistics, on the other hand, test how well a model predicts data or information that were not used in the structure-determination process. These may be data that were excluded from the process on purpose, general knowledge about macromolecular structure, information about the biological role and biochemical activity of the molecule under study or its mutants or complexes and predictions that are based on the model and that can be tested experimentally. |
format | Text |
id | pubmed-2631629 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-26316292009-03-05 On vital aid: the why, what and how of validation Kleywegt, Gerard J. Acta Crystallogr D Biol Crystallogr Research Papers Limitations to the data and subjectivity in the structure-determination process may cause errors in macromolecular crystal structures. Appropriate validation techniques may be used to reveal problems in structures, ideally before they are analysed, published or deposited. Additionally, such techniques may be used a posteriori to assess the (relative) merits of a model by potential users. Weak validation methods and statistics assess how well a model reproduces the information that was used in its construction (i.e. experimental data and prior knowledge). Strong methods and statistics, on the other hand, test how well a model predicts data or information that were not used in the structure-determination process. These may be data that were excluded from the process on purpose, general knowledge about macromolecular structure, information about the biological role and biochemical activity of the molecule under study or its mutants or complexes and predictions that are based on the model and that can be tested experimentally. International Union of Crystallography 2009-02-01 2009-01-20 /pmc/articles/PMC2631629/ /pubmed/19171968 http://dx.doi.org/10.1107/S090744490900081X Text en © Kleywegt 2009 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Kleywegt, Gerard J. On vital aid: the why, what and how of validation |
title | On vital aid: the why, what and how of validation |
title_full | On vital aid: the why, what and how of validation |
title_fullStr | On vital aid: the why, what and how of validation |
title_full_unstemmed | On vital aid: the why, what and how of validation |
title_short | On vital aid: the why, what and how of validation |
title_sort | on vital aid: the why, what and how of validation |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631629/ https://www.ncbi.nlm.nih.gov/pubmed/19171968 http://dx.doi.org/10.1107/S090744490900081X |
work_keys_str_mv | AT kleywegtgerardj onvitalaidthewhywhatandhowofvalidation |