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Structure validation in chemical crystallography
Automated structure validation was introduced in chemical crystallography about 12 years ago as a tool to assist practitioners with the exponential growth in crystal structure analyses. Validation has since evolved into an easy-to-use checkCIF/PLATON web-based IUCr service. The result of a crystal s...
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2009
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631630/ https://www.ncbi.nlm.nih.gov/pubmed/19171970 http://dx.doi.org/10.1107/S090744490804362X |
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author | Spek, Anthony L. |
author_facet | Spek, Anthony L. |
author_sort | Spek, Anthony L. |
collection | PubMed |
description | Automated structure validation was introduced in chemical crystallography about 12 years ago as a tool to assist practitioners with the exponential growth in crystal structure analyses. Validation has since evolved into an easy-to-use checkCIF/PLATON web-based IUCr service. The result of a crystal structure determination has to be supplied as a CIF-formatted computer-readable file. The checking software tests the data in the CIF for completeness, quality and consistency. In addition, the reported structure is checked for incomplete analysis, errors in the analysis and relevant issues to be verified. A validation report is generated in the form of a list of ALERTS on the issues to be corrected, checked or commented on. Structure validation has largely eliminated obvious problems with structure reports published in IUCr journals, such as refinement in a space group of too low symmetry. This paper reports on the current status of structure validation and possible future extensions. |
format | Text |
id | pubmed-2631630 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-26316302009-03-05 Structure validation in chemical crystallography Spek, Anthony L. Acta Crystallogr D Biol Crystallogr Research Papers Automated structure validation was introduced in chemical crystallography about 12 years ago as a tool to assist practitioners with the exponential growth in crystal structure analyses. Validation has since evolved into an easy-to-use checkCIF/PLATON web-based IUCr service. The result of a crystal structure determination has to be supplied as a CIF-formatted computer-readable file. The checking software tests the data in the CIF for completeness, quality and consistency. In addition, the reported structure is checked for incomplete analysis, errors in the analysis and relevant issues to be verified. A validation report is generated in the form of a list of ALERTS on the issues to be corrected, checked or commented on. Structure validation has largely eliminated obvious problems with structure reports published in IUCr journals, such as refinement in a space group of too low symmetry. This paper reports on the current status of structure validation and possible future extensions. International Union of Crystallography 2009-02-01 2009-01-20 /pmc/articles/PMC2631630/ /pubmed/19171970 http://dx.doi.org/10.1107/S090744490804362X Text en © Spek 2009 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Spek, Anthony L. Structure validation in chemical crystallography |
title | Structure validation in chemical crystallography |
title_full | Structure validation in chemical crystallography |
title_fullStr | Structure validation in chemical crystallography |
title_full_unstemmed | Structure validation in chemical crystallography |
title_short | Structure validation in chemical crystallography |
title_sort | structure validation in chemical crystallography |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2631630/ https://www.ncbi.nlm.nih.gov/pubmed/19171970 http://dx.doi.org/10.1107/S090744490804362X |
work_keys_str_mv | AT spekanthonyl structurevalidationinchemicalcrystallography |