Cargando…

The impact of image dynamic range on texture classification of brain white matter

BACKGROUND: The Greylevel Cooccurrence Matrix method (COM) is one of the most promising methods used in Texture Analysis of Magnetic Resonance Images. This method provides statistical information about the spatial distribution of greylevels in the image which can be used for classification of differ...

Descripción completa

Detalles Bibliográficos
Autores principales: Mahmoud-Ghoneim, Doaa, Alkaabi, Mariam K, de Certaines, Jacques D, Goettsche, Frank-M
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633271/
https://www.ncbi.nlm.nih.gov/pubmed/19105825
http://dx.doi.org/10.1186/1471-2342-8-18
_version_ 1782164092739387392
author Mahmoud-Ghoneim, Doaa
Alkaabi, Mariam K
de Certaines, Jacques D
Goettsche, Frank-M
author_facet Mahmoud-Ghoneim, Doaa
Alkaabi, Mariam K
de Certaines, Jacques D
Goettsche, Frank-M
author_sort Mahmoud-Ghoneim, Doaa
collection PubMed
description BACKGROUND: The Greylevel Cooccurrence Matrix method (COM) is one of the most promising methods used in Texture Analysis of Magnetic Resonance Images. This method provides statistical information about the spatial distribution of greylevels in the image which can be used for classification of different tissue regions. Optimizing the size and complexity of the COM has the potential to enhance the reliability of Texture Analysis results. In this paper we investigate the effect of matrix size and calculation approach on the ability of COM to discriminate between peritumoral white matter and other white matter regions. METHOD: MR images were obtained from patients with histologically confirmed brain glioblastoma using MRI at 3-T giving isotropic resolution of 1 mm(3). Three Regions of Interest (ROI) were outlined in visually normal white matter on three image slices based on relative distance from the tumor: one peritumoral white matter region and two distant white matter regions on both hemispheres. Volumes of Interest (VOI) were composed from the three slices. Two different calculation approaches for COM were used: i) Classical approach (CCOM) on each individual ROI, and ii) Three Dimensional approach (3DCOM) calculated on VOIs. For, each calculation approach five dynamic ranges (number of greylevels N) were investigated (N = 16, 32, 64, 128, and 256). RESULTS: Classification showed that peritumoral white matter always represents a homogenous class, separate from other white matter, regardless of the value of N or the calculation approach used. The best test measures (sensitivity and specificity) for average CCOM were obtained for N = 128. These measures were also optimal for 3DCOM with N = 128, which additionally showed a balanced tradeoff between the measures. CONCLUSION: We conclude that the dynamic range used for COM calculation significantly influences the classification results for identical samples. In order to obtain more reliable classification results with COM, the dynamic range must be optimized to avoid too small or sparse matrices. Larger dynamic ranges for COM calculations do not necessarily give better texture results; they might increase the computation costs and limit the method performance.
format Text
id pubmed-2633271
institution National Center for Biotechnology Information
language English
publishDate 2008
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-26332712009-01-31 The impact of image dynamic range on texture classification of brain white matter Mahmoud-Ghoneim, Doaa Alkaabi, Mariam K de Certaines, Jacques D Goettsche, Frank-M BMC Med Imaging Research Article BACKGROUND: The Greylevel Cooccurrence Matrix method (COM) is one of the most promising methods used in Texture Analysis of Magnetic Resonance Images. This method provides statistical information about the spatial distribution of greylevels in the image which can be used for classification of different tissue regions. Optimizing the size and complexity of the COM has the potential to enhance the reliability of Texture Analysis results. In this paper we investigate the effect of matrix size and calculation approach on the ability of COM to discriminate between peritumoral white matter and other white matter regions. METHOD: MR images were obtained from patients with histologically confirmed brain glioblastoma using MRI at 3-T giving isotropic resolution of 1 mm(3). Three Regions of Interest (ROI) were outlined in visually normal white matter on three image slices based on relative distance from the tumor: one peritumoral white matter region and two distant white matter regions on both hemispheres. Volumes of Interest (VOI) were composed from the three slices. Two different calculation approaches for COM were used: i) Classical approach (CCOM) on each individual ROI, and ii) Three Dimensional approach (3DCOM) calculated on VOIs. For, each calculation approach five dynamic ranges (number of greylevels N) were investigated (N = 16, 32, 64, 128, and 256). RESULTS: Classification showed that peritumoral white matter always represents a homogenous class, separate from other white matter, regardless of the value of N or the calculation approach used. The best test measures (sensitivity and specificity) for average CCOM were obtained for N = 128. These measures were also optimal for 3DCOM with N = 128, which additionally showed a balanced tradeoff between the measures. CONCLUSION: We conclude that the dynamic range used for COM calculation significantly influences the classification results for identical samples. In order to obtain more reliable classification results with COM, the dynamic range must be optimized to avoid too small or sparse matrices. Larger dynamic ranges for COM calculations do not necessarily give better texture results; they might increase the computation costs and limit the method performance. BioMed Central 2008-12-23 /pmc/articles/PMC2633271/ /pubmed/19105825 http://dx.doi.org/10.1186/1471-2342-8-18 Text en Copyright © 2008 Mahmoud-Ghoneim et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Mahmoud-Ghoneim, Doaa
Alkaabi, Mariam K
de Certaines, Jacques D
Goettsche, Frank-M
The impact of image dynamic range on texture classification of brain white matter
title The impact of image dynamic range on texture classification of brain white matter
title_full The impact of image dynamic range on texture classification of brain white matter
title_fullStr The impact of image dynamic range on texture classification of brain white matter
title_full_unstemmed The impact of image dynamic range on texture classification of brain white matter
title_short The impact of image dynamic range on texture classification of brain white matter
title_sort impact of image dynamic range on texture classification of brain white matter
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633271/
https://www.ncbi.nlm.nih.gov/pubmed/19105825
http://dx.doi.org/10.1186/1471-2342-8-18
work_keys_str_mv AT mahmoudghoneimdoaa theimpactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT alkaabimariamk theimpactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT decertainesjacquesd theimpactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT goettschefrankm theimpactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT mahmoudghoneimdoaa impactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT alkaabimariamk impactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT decertainesjacquesd impactofimagedynamicrangeontextureclassificationofbrainwhitematter
AT goettschefrankm impactofimagedynamicrangeontextureclassificationofbrainwhitematter