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NEURON and Python

The NEURON simulation program now allows Python to be used, alone or in combination with NEURON's traditional Hoc interpreter. Adding Python to NEURON has the immediate benefit of making available a very extensive suite of analysis tools written for engineering and science. It also catalyzes NE...

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Detalles Bibliográficos
Autores principales: Hines, Michael L., Davison, Andrew P., Muller, Eilif
Formato: Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636686/
https://www.ncbi.nlm.nih.gov/pubmed/19198661
http://dx.doi.org/10.3389/neuro.11.001.2009
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author Hines, Michael L.
Davison, Andrew P.
Muller, Eilif
author_facet Hines, Michael L.
Davison, Andrew P.
Muller, Eilif
author_sort Hines, Michael L.
collection PubMed
description The NEURON simulation program now allows Python to be used, alone or in combination with NEURON's traditional Hoc interpreter. Adding Python to NEURON has the immediate benefit of making available a very extensive suite of analysis tools written for engineering and science. It also catalyzes NEURON software development by offering users a modern programming tool that is recognized for its flexibility and power to create and maintain complex programs. At the same time, nothing is lost because all existing models written in Hoc, including graphical user interface tools, continue to work without change and are also available within the Python context. An example of the benefits of Python availability is the use of the xml module in implementing NEURON's Import3D and CellBuild tools to read MorphML and NeuroML model specifications.
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spelling pubmed-26366862009-02-06 NEURON and Python Hines, Michael L. Davison, Andrew P. Muller, Eilif Front Neuroinformatics Neuroscience The NEURON simulation program now allows Python to be used, alone or in combination with NEURON's traditional Hoc interpreter. Adding Python to NEURON has the immediate benefit of making available a very extensive suite of analysis tools written for engineering and science. It also catalyzes NEURON software development by offering users a modern programming tool that is recognized for its flexibility and power to create and maintain complex programs. At the same time, nothing is lost because all existing models written in Hoc, including graphical user interface tools, continue to work without change and are also available within the Python context. An example of the benefits of Python availability is the use of the xml module in implementing NEURON's Import3D and CellBuild tools to read MorphML and NeuroML model specifications. Frontiers Research Foundation 2009-01-28 /pmc/articles/PMC2636686/ /pubmed/19198661 http://dx.doi.org/10.3389/neuro.11.001.2009 Text en Copyright © 2009 Hines, Davison and Muller. http://www.frontiersin.org/licenseagreement This is an open-access article subject to an exclusive license agreement between the authors and the Frontiers Research Foundation, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
spellingShingle Neuroscience
Hines, Michael L.
Davison, Andrew P.
Muller, Eilif
NEURON and Python
title NEURON and Python
title_full NEURON and Python
title_fullStr NEURON and Python
title_full_unstemmed NEURON and Python
title_short NEURON and Python
title_sort neuron and python
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636686/
https://www.ncbi.nlm.nih.gov/pubmed/19198661
http://dx.doi.org/10.3389/neuro.11.001.2009
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