Cargando…

Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data

This paper addresses the need for relatively small groups of collaborating investigators to integrate distributed and heterogeneous data about the brain. Although various national efforts facilitate large-scale data sharing, these approaches are generally too “heavyweight” for individual or small gr...

Descripción completa

Detalles Bibliográficos
Autores principales: Detwiler, Landon T., Suciu, Dan, Franklin, Joshua D., Moore, Eider B., Poliakov, Andrew V., Lee, Eunjung S., Corina, David P., Ojemann, George A., Brinkley, James F.
Formato: Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636687/
https://www.ncbi.nlm.nih.gov/pubmed/19198662
http://dx.doi.org/10.3389/neuro.11.002.2009
_version_ 1782164296071905280
author Detwiler, Landon T.
Suciu, Dan
Franklin, Joshua D.
Moore, Eider B.
Poliakov, Andrew V.
Lee, Eunjung S.
Corina, David P.
Ojemann, George A.
Brinkley, James F.
author_facet Detwiler, Landon T.
Suciu, Dan
Franklin, Joshua D.
Moore, Eider B.
Poliakov, Andrew V.
Lee, Eunjung S.
Corina, David P.
Ojemann, George A.
Brinkley, James F.
author_sort Detwiler, Landon T.
collection PubMed
description This paper addresses the need for relatively small groups of collaborating investigators to integrate distributed and heterogeneous data about the brain. Although various national efforts facilitate large-scale data sharing, these approaches are generally too “heavyweight” for individual or small groups of investigators, with the result that most data sharing among collaborators continues to be ad hoc. Our approach to this problem is to create a “lightweight” distributed query architecture, in which data sources are accessible via web services that accept arbitrary query languages but return XML results. A Distributed XQuery Processor (DXQP) accepts distributed XQueries in which subqueries are shipped to the remote data sources to be executed, with the resulting XML integrated by DXQP. A web-based application called DXBrain accesses DXQP, allowing a user to create, save and execute distributed XQueries, and to view the results in various formats including a 3-D brain visualization. Example results are presented using distributed brain mapping data sources obtained in studies of language organization in the brain, but any other XML source could be included. The advantage of this approach is that it is very easy to add and query a new source, the tradeoff being that the user needs to understand XQuery and the schemata of the underlying sources. For small numbers of known sources this burden is not onerous for a knowledgeable user, leading to the conclusion that the system helps to fill the gap between ad hoc local methods and large scale but complex national data sharing efforts.
format Text
id pubmed-2636687
institution National Center for Biotechnology Information
language English
publishDate 2009
publisher Frontiers Research Foundation
record_format MEDLINE/PubMed
spelling pubmed-26366872009-02-06 Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data Detwiler, Landon T. Suciu, Dan Franklin, Joshua D. Moore, Eider B. Poliakov, Andrew V. Lee, Eunjung S. Corina, David P. Ojemann, George A. Brinkley, James F. Front Neuroinformatics Neuroscience This paper addresses the need for relatively small groups of collaborating investigators to integrate distributed and heterogeneous data about the brain. Although various national efforts facilitate large-scale data sharing, these approaches are generally too “heavyweight” for individual or small groups of investigators, with the result that most data sharing among collaborators continues to be ad hoc. Our approach to this problem is to create a “lightweight” distributed query architecture, in which data sources are accessible via web services that accept arbitrary query languages but return XML results. A Distributed XQuery Processor (DXQP) accepts distributed XQueries in which subqueries are shipped to the remote data sources to be executed, with the resulting XML integrated by DXQP. A web-based application called DXBrain accesses DXQP, allowing a user to create, save and execute distributed XQueries, and to view the results in various formats including a 3-D brain visualization. Example results are presented using distributed brain mapping data sources obtained in studies of language organization in the brain, but any other XML source could be included. The advantage of this approach is that it is very easy to add and query a new source, the tradeoff being that the user needs to understand XQuery and the schemata of the underlying sources. For small numbers of known sources this burden is not onerous for a knowledgeable user, leading to the conclusion that the system helps to fill the gap between ad hoc local methods and large scale but complex national data sharing efforts. Frontiers Research Foundation 2009-01-30 /pmc/articles/PMC2636687/ /pubmed/19198662 http://dx.doi.org/10.3389/neuro.11.002.2009 Text en Copyright © 2009 Detwiler, Suciu, Franklin, Moore, Poliakov, Lee, Corina, Ojemann and Brinkley. http://www.frontiersin.org/licenseagreement This is an open-access article subject to an exclusive license agreement between the authors and the Frontiers Research Foundation, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
spellingShingle Neuroscience
Detwiler, Landon T.
Suciu, Dan
Franklin, Joshua D.
Moore, Eider B.
Poliakov, Andrew V.
Lee, Eunjung S.
Corina, David P.
Ojemann, George A.
Brinkley, James F.
Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title_full Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title_fullStr Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title_full_unstemmed Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title_short Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data
title_sort distributed xquery-based integration and visualization of multimodality brain mapping data
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636687/
https://www.ncbi.nlm.nih.gov/pubmed/19198662
http://dx.doi.org/10.3389/neuro.11.002.2009
work_keys_str_mv AT detwilerlandont distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT suciudan distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT franklinjoshuad distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT mooreeiderb distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT poliakovandrewv distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT leeeunjungs distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT corinadavidp distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT ojemanngeorgea distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata
AT brinkleyjamesf distributedxquerybasedintegrationandvisualizationofmultimodalitybrainmappingdata