Cargando…

Identifying differential exon splicing using linear models and correlation coefficients

BACKGROUND: With the availability of the Affymetrix exon arrays a number of tools have been developed to enable the analysis. These however can be expensive or have several pre-installation requirements. This led us to develop an analysis workflow for analysing differential splicing using freely ava...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shah, Sonia H, Pallas, Jacqueline A
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2009
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636774/ https://www.ncbi.nlm.nih.gov/pubmed/19154578 http://dx.doi.org/10.1186/1471-2105-10-26

Ejemplares similares

A random effects model for the identification of differential splicing (REIDS) using exon and HTA arrays
por: Van Moerbeke, Marijke, et al.
Publicado: (2017)

An introduction to new robust linear and monotonic correlation coefficients
por: Tabatabai, Mohammad, et al.
Publicado: (2021)

Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays
por: Kechris, Katerina, et al.
Publicado: (2008)

Temporal correlation coefficient for directed networks
por: Büttner, Kathrin, et al.
Publicado: (2016)

A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples
por: Risueño, Alberto, et al.
Publicado: (2014)

A simple method for identifying parameter correlations in partially observed linear dynamic models
por: Li, Pu, et al.
Publicado: (2015)

The effects of multiple features of alternatively spliced exons on the K(A)/K(S )ratio test
por: Chen, Feng-Chi, et al.
Publicado: (2006)

Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
por: Lu, Jun, et al.
Publicado: (2005)

Intra-cluster correlation coefficients in primary care patients with type 2 diabetes and hypertension
por: Lee, Yi Lin, et al.
Publicado: (2020)

The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model
por: Van Moerbeke, Marijke, et al.
Publicado: (2018)

Intracluster correlation coefficients in the Greater Mekong Subregion for sample size calculations of cluster randomized malaria trials
por: Peerawaranun, Pimnara, et al.
Publicado: (2019)

Identifying module biomarkers from gastric cancer by differential correlation network
por: Liu, Xiaoping, et al.
Publicado: (2016)

The Matthews correlation coefficient (MCC) should replace the ROC AUC as the standard metric for assessing binary classification
por: Chicco, Davide, et al.
Publicado: (2023)

Fully moderated t-statistic in linear modeling of mixed effects for differential expression analysis
por: Yu, Lianbo, et al.
Publicado: (2019)

Differential splicing using whole-transcript microarrays
por: Robinson, Mark D, et al.
Publicado: (2009)

Using the value of Lin’s concordance correlation coefficient as a criterion for efficient estimation of areas of leaves of eelgrass from noisy digital images
por: Echavarría-Heras, Héctor, et al.
Publicado: (2014)

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
por: Mo, Fan, et al.
Publicado: (2008)

Adaption of the temporal correlation coefficient calculation for temporal networks (applied to a real-world pig trade network)
por: Büttner, Kathrin, et al.
Publicado: (2016)

Linear differential operators with constant coefficients
por: Palamodov, Viktor P
Publicado: (1970)

Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
por: Peng, Shouyong, et al.
Publicado: (2010)

Modified Pearson correlation coefficient for two-color imaging in spherocylindrical cells
por: Mohapatra, Sonisilpa, et al.
Publicado: (2018)

Streamlining differential exon and 3′ UTR usage with diffUTR
por: Gerber, Stefan, et al.
Publicado: (2021)

CRISPR/Cas9-mediated genome editing induces exon skipping by complete or stochastic altering splicing in the migratory locust
por: Chen, Dafeng, et al.
Publicado: (2018)

Identifying Alternative Hyper-Splicing Signatures in MG-Thymoma by Exon Arrays
por: Soreq, Lilach, et al.
Publicado: (2008)

Identifying differential correlation in gene/pathway combinations
por: Braun, Rosemary, et al.
Publicado: (2008)

BALLI: Bartlett-adjusted likelihood-based linear model approach for identifying differentially expressed genes with RNA-seq data
por: Park, Kyungtaek, et al.
Publicado: (2019)

Methylation Linear Discriminant Analysis (MLDA) for identifying differentially methylated CpG islands
por: Dai, Wei, et al.
Publicado: (2008)

Guidelines for correlation coefficient threshold settings in metabolite correlation networks exemplified on a potato association panel
por: Toubiana, David, et al.
Publicado: (2021)

SpliceFinder: ab initio prediction of splice sites using convolutional neural network
por: Wang, Ruohan, et al.
Publicado: (2019)

Analysis of multiple-period group randomized trials: random coefficients model or repeated measures ANOVA?
por: Moyer, Jonathan C., et al.
Publicado: (2022)

Using Gini coefficient to determining optimal cluster reporting sizes for spatial scan statistics
por: Han, Junhee, et al.
Publicado: (2016)

The Matthews correlation coefficient (MCC) is more reliable than balanced accuracy, bookmaker informedness, and markedness in two-class confusion matrix evaluation
por: Chicco, Davide, et al.
Publicado: (2021)

A practical guide to estimating the light extinction coefficient with nonlinear models—a case study on maize
por: Lacasa, Josefina, et al.
Publicado: (2021)

Splicing of designer exons informs a biophysical model for exon definition
por: Arias, Mauricio A., et al.
Publicado: (2015)

A procedure for identifying homologous alternative splicing events
por: Talavera, David, et al.
Publicado: (2007)

Identification of differential splicing genes in gliomas using exon expression profiling
por: YU, FENG, et al.
Publicado: (2015)

Power analysis for RNA-Seq differential expression studies using generalized linear mixed effects models
por: Yu, Lianbo, et al.
Publicado: (2020)

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
por: Das, Debopriya, et al.
Publicado: (2007)

The coefficient of cyclic variation: a novel statistic to measure the magnitude of cyclic variation
por: Fulford, Anthony JC
Publicado: (2014)

Multivariate Analysis and Visualization of Splicing Correlations in Single-Gene Transcriptomes
por: Emerick, Mark C, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_mnnn2qsvlspiud6bleur27ljk6