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Accurate and robust gene selection for disease classification using a simple statistic
Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classifica...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics Publishing Group
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637954/ https://www.ncbi.nlm.nih.gov/pubmed/19238233 |
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author | Mutsubayashi, Hikaru Aso, Seiichiro Nagashima, Tomomasa Okada, Yoshifumi |
author_facet | Mutsubayashi, Hikaru Aso, Seiichiro Nagashima, Tomomasa Okada, Yoshifumi |
author_sort | Mutsubayashi, Hikaru |
collection | PubMed |
description | Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classification on microarray, we present a gene selection method based on the forward variable (gene) selection method (FSM) and show, using typical public microarray datasets, that our method can extract a small set of genes being crucial for discriminating different classes with a very high accuracy almost closed to perfect classification. |
format | Text |
id | pubmed-2637954 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | Biomedical Informatics Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-26379542009-02-23 Accurate and robust gene selection for disease classification using a simple statistic Mutsubayashi, Hikaru Aso, Seiichiro Nagashima, Tomomasa Okada, Yoshifumi Bioinformation Prediction Model Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classification on microarray, we present a gene selection method based on the forward variable (gene) selection method (FSM) and show, using typical public microarray datasets, that our method can extract a small set of genes being crucial for discriminating different classes with a very high accuracy almost closed to perfect classification. Biomedical Informatics Publishing Group 2008-10-24 /pmc/articles/PMC2637954/ /pubmed/19238233 Text en © 2007 Biomedical Informatics Publishing Group This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Prediction Model Mutsubayashi, Hikaru Aso, Seiichiro Nagashima, Tomomasa Okada, Yoshifumi Accurate and robust gene selection for disease classification using a simple statistic |
title | Accurate and robust gene selection for disease classification using a simple statistic |
title_full | Accurate and robust gene selection for disease classification using a simple statistic |
title_fullStr | Accurate and robust gene selection for disease classification using a simple statistic |
title_full_unstemmed | Accurate and robust gene selection for disease classification using a simple statistic |
title_short | Accurate and robust gene selection for disease classification using a simple statistic |
title_sort | accurate and robust gene selection for disease classification using a simple statistic |
topic | Prediction Model |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637954/ https://www.ncbi.nlm.nih.gov/pubmed/19238233 |
work_keys_str_mv | AT mutsubayashihikaru accurateandrobustgeneselectionfordiseaseclassificationusingasimplestatistic AT asoseiichiro accurateandrobustgeneselectionfordiseaseclassificationusingasimplestatistic AT nagashimatomomasa accurateandrobustgeneselectionfordiseaseclassificationusingasimplestatistic AT okadayoshifumi accurateandrobustgeneselectionfordiseaseclassificationusingasimplestatistic |