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Accurate and robust gene selection for disease classification using a simple statistic

Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classifica...

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Detalles Bibliográficos
Autores principales: Mutsubayashi, Hikaru, Aso, Seiichiro, Nagashima, Tomomasa, Okada, Yoshifumi
Formato: Texto
Lenguaje:English
Publicado: Biomedical Informatics Publishing Group 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637954/
https://www.ncbi.nlm.nih.gov/pubmed/19238233
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author Mutsubayashi, Hikaru
Aso, Seiichiro
Nagashima, Tomomasa
Okada, Yoshifumi
author_facet Mutsubayashi, Hikaru
Aso, Seiichiro
Nagashima, Tomomasa
Okada, Yoshifumi
author_sort Mutsubayashi, Hikaru
collection PubMed
description Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classification on microarray, we present a gene selection method based on the forward variable (gene) selection method (FSM) and show, using typical public microarray datasets, that our method can extract a small set of genes being crucial for discriminating different classes with a very high accuracy almost closed to perfect classification.
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spelling pubmed-26379542009-02-23 Accurate and robust gene selection for disease classification using a simple statistic Mutsubayashi, Hikaru Aso, Seiichiro Nagashima, Tomomasa Okada, Yoshifumi Bioinformation Prediction Model Discrimination of disease patients based on gene expression data is a crucial problem in clinical area. An important issue to solve this problem is to find a discriminative subset of genes from thousands of genes on a microarray or DNA chip. Aiming at finding informative genes for disease classification on microarray, we present a gene selection method based on the forward variable (gene) selection method (FSM) and show, using typical public microarray datasets, that our method can extract a small set of genes being crucial for discriminating different classes with a very high accuracy almost closed to perfect classification. Biomedical Informatics Publishing Group 2008-10-24 /pmc/articles/PMC2637954/ /pubmed/19238233 Text en © 2007 Biomedical Informatics Publishing Group This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Prediction Model
Mutsubayashi, Hikaru
Aso, Seiichiro
Nagashima, Tomomasa
Okada, Yoshifumi
Accurate and robust gene selection for disease classification using a simple statistic
title Accurate and robust gene selection for disease classification using a simple statistic
title_full Accurate and robust gene selection for disease classification using a simple statistic
title_fullStr Accurate and robust gene selection for disease classification using a simple statistic
title_full_unstemmed Accurate and robust gene selection for disease classification using a simple statistic
title_short Accurate and robust gene selection for disease classification using a simple statistic
title_sort accurate and robust gene selection for disease classification using a simple statistic
topic Prediction Model
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637954/
https://www.ncbi.nlm.nih.gov/pubmed/19238233
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