SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences

The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named “SNP-Flankplus” to provide a web environment for retrieval of SNP flanking sequences from both t...

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Autores principales: Yang, Cheng-Hong, Cheng, Yu-Huei, Chuang, Li-Yeh, Chang, Hsueh-Wei
Formato: Texto
Lenguaje:English
Publicado: Biomedical Informatics Publishing Group 2008
Materias:
Web Server
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637961/
https://www.ncbi.nlm.nih.gov/pubmed/19238236
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author Yang, Cheng-Hong
Cheng, Yu-Huei
Chuang, Li-Yeh
Chang, Hsueh-Wei
author_facet Yang, Cheng-Hong
Cheng, Yu-Huei
Chuang, Li-Yeh
Chang, Hsueh-Wei
author_sort Yang, Cheng-Hong
collection PubMed
description The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named “SNP-Flankplus” to provide a web environment for retrieval of SNP flanking sequences from both the dbSNP and the nucleotide databases of NCBI. Two SNP ID types, rs# and ss#, are acceptable for querying SNP flanking sequences with adjustable lengths for at least sixteen organisms. AVAILABILITY: This software is freely available at http://bio.kuas.edu.tw/snp-flankplus/
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spelling pubmed-26379612009-02-23 SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences Yang, Cheng-Hong Cheng, Yu-Huei Chuang, Li-Yeh Chang, Hsueh-Wei Bioinformation Web Server The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named “SNP-Flankplus” to provide a web environment for retrieval of SNP flanking sequences from both the dbSNP and the nucleotide databases of NCBI. Two SNP ID types, rs# and ss#, are acceptable for querying SNP flanking sequences with adjustable lengths for at least sixteen organisms. AVAILABILITY: This software is freely available at http://bio.kuas.edu.tw/snp-flankplus/ Biomedical Informatics Publishing Group 2008-12-06 /pmc/articles/PMC2637961/ /pubmed/19238236 Text en © 2007 Biomedical Informatics Publishing Group This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Web Server
Yang, Cheng-Hong
Cheng, Yu-Huei
Chuang, Li-Yeh
Chang, Hsueh-Wei
SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title_full SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title_fullStr SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title_full_unstemmed SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title_short SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
title_sort snp-flankplus: snp id-centric retrieval for snp flanking sequences
topic Web Server
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2637961/
https://www.ncbi.nlm.nih.gov/pubmed/19238236
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