MPIDB: the microbial protein interaction database

Summary: The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 22 530 experimentally determined interactions among proteins of 191 bacterial species/strains can be browsed and downloaded. These microbial interactions have...

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Detalles Bibliográficos
Autores principales: Goll, Johannes, Rajagopala, Seesandra V., Shiau, Shen C., Wu, Hank, Lamb, Brian T., Uetz, Peter
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638870/
https://www.ncbi.nlm.nih.gov/pubmed/18556668
http://dx.doi.org/10.1093/bioinformatics/btn285
Descripción
Sumario:Summary: The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 22 530 experimentally determined interactions among proteins of 191 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 24 060 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 8150 additional evidences based on interaction conservation, co-purification and 3D domain contacts (iPfam, 3did). Availability: http://www.jcvi.org/mpidb/ Contact: jgoll@jcvi.org

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