MPIDB: the microbial protein interaction database

Summary: The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 22 530 experimentally determined interactions among proteins of 191 bacterial species/strains can be browsed and downloaded. These microbial interactions have...

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Autores principales: Goll, Johannes, Rajagopala, Seesandra V., Shiau, Shen C., Wu, Hank, Lamb, Brian T., Uetz, Peter
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638870/
https://www.ncbi.nlm.nih.gov/pubmed/18556668
http://dx.doi.org/10.1093/bioinformatics/btn285
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author Goll, Johannes
Rajagopala, Seesandra V.
Shiau, Shen C.
Wu, Hank
Lamb, Brian T.
Uetz, Peter
author_facet Goll, Johannes
Rajagopala, Seesandra V.
Shiau, Shen C.
Wu, Hank
Lamb, Brian T.
Uetz, Peter
author_sort Goll, Johannes
collection PubMed
description Summary: The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 22 530 experimentally determined interactions among proteins of 191 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 24 060 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 8150 additional evidences based on interaction conservation, co-purification and 3D domain contacts (iPfam, 3did). Availability: http://www.jcvi.org/mpidb/ Contact: jgoll@jcvi.org
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spelling pubmed-26388702009-02-25 MPIDB: the microbial protein interaction database Goll, Johannes Rajagopala, Seesandra V. Shiau, Shen C. Wu, Hank Lamb, Brian T. Uetz, Peter Bioinformatics Applications Note Summary: The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 22 530 experimentally determined interactions among proteins of 191 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 24 060 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 8150 additional evidences based on interaction conservation, co-purification and 3D domain contacts (iPfam, 3did). Availability: http://www.jcvi.org/mpidb/ Contact: jgoll@jcvi.org Oxford University Press 2008-08-01 2008-06-13 /pmc/articles/PMC2638870/ /pubmed/18556668 http://dx.doi.org/10.1093/bioinformatics/btn285 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Goll, Johannes
Rajagopala, Seesandra V.
Shiau, Shen C.
Wu, Hank
Lamb, Brian T.
Uetz, Peter
MPIDB: the microbial protein interaction database
title MPIDB: the microbial protein interaction database
title_full MPIDB: the microbial protein interaction database
title_fullStr MPIDB: the microbial protein interaction database
title_full_unstemmed MPIDB: the microbial protein interaction database
title_short MPIDB: the microbial protein interaction database
title_sort mpidb: the microbial protein interaction database
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638870/
https://www.ncbi.nlm.nih.gov/pubmed/18556668
http://dx.doi.org/10.1093/bioinformatics/btn285
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