Selection of oligonucleotides for whole-genome microarrays with semi-automatic update

Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections o...

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Detalles Bibliográficos
Autores principales: Golfier, G., Lemoine, S., van Miltenberg, A., Bendjoudi, A., Rossier, J., Le Crom, S., Potier, M.-C.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638942/
https://www.ncbi.nlm.nih.gov/pubmed/19015129
http://dx.doi.org/10.1093/bioinformatics/btn573
Descripción
Sumario:Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database. Availability: http://www.bio.espci.fr/sol/ Contact: marie-claude.potier@espci.fr Supplementary information: Supplementary data are available at http://www.bio.espci.fr/sol/

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