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Selection of oligonucleotides for whole-genome microarrays with semi-automatic update
Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections o...
| Autores principales: | , , , , , , |
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| Formato: | Texto |
| Lenguaje: | English |
| Publicado: |
Oxford University Press
2009
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638942/ https://www.ncbi.nlm.nih.gov/pubmed/19015129 http://dx.doi.org/10.1093/bioinformatics/btn573 |
| _version_ | 1782164431642296320 |
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| author | Golfier, G. Lemoine, S. van Miltenberg, A. Bendjoudi, A. Rossier, J. Le Crom, S. Potier, M.-C. |
| author_facet | Golfier, G. Lemoine, S. van Miltenberg, A. Bendjoudi, A. Rossier, J. Le Crom, S. Potier, M.-C. |
| author_sort | Golfier, G. |
| collection | PubMed |
| description | Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database. Availability: http://www.bio.espci.fr/sol/ Contact: marie-claude.potier@espci.fr Supplementary information: Supplementary data are available at http://www.bio.espci.fr/sol/ |
| format | Text |
| id | pubmed-2638942 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2009 |
| publisher | Oxford University Press |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-26389422009-02-25 Selection of oligonucleotides for whole-genome microarrays with semi-automatic update Golfier, G. Lemoine, S. van Miltenberg, A. Bendjoudi, A. Rossier, J. Le Crom, S. Potier, M.-C. Bioinformatics Applications Note Summary: Oligonucleotide microarray probes are designed to match specific transcripts present in databases that are regularly updated. As a consequence probes should be checked every new database release. We thus developed an informatics tool allowing the semi-automatic update of probe collections of long oligonucleotides and applied it to the mouse RefSeq database. Availability: http://www.bio.espci.fr/sol/ Contact: marie-claude.potier@espci.fr Supplementary information: Supplementary data are available at http://www.bio.espci.fr/sol/ Oxford University Press 2009-01-01 2008-11-10 /pmc/articles/PMC2638942/ /pubmed/19015129 http://dx.doi.org/10.1093/bioinformatics/btn573 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Applications Note Golfier, G. Lemoine, S. van Miltenberg, A. Bendjoudi, A. Rossier, J. Le Crom, S. Potier, M.-C. Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title | Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title_full | Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title_fullStr | Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title_full_unstemmed | Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title_short | Selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| title_sort | selection of oligonucleotides for whole-genome microarrays with semi-automatic update |
| topic | Applications Note |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2638942/ https://www.ncbi.nlm.nih.gov/pubmed/19015129 http://dx.doi.org/10.1093/bioinformatics/btn573 |
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