Cargando…

AmiGO: online access to ontology and annotation data

AmiGO is a web application that allows users to query, browse and visualize ontologies and related gene product annotation (association) data. AmiGO can be used online at the Gene Ontology (GO) website to access the data provided by the GO Consortium; it can also be downloaded and installed to brows...

Descripción completa

Detalles Bibliográficos
Autores principales:	Carbon, Seth, Ireland, Amelia, Mungall, Christopher J., Shu, ShengQiang, Marshall, Brad, Lewis, Suzanna
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639003/ https://www.ncbi.nlm.nih.gov/pubmed/19033274 http://dx.doi.org/10.1093/bioinformatics/btn615

Ejemplares similares

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
por: Bindea, Gabriela, et al.
Publicado: (2009)

The Sequence Ontology: a tool for the unification of genome annotations
por: Eilbeck, Karen, et al.
Publicado: (2005)

Sequence Ontology Annotation Guide
por: Eilbeck, Karen, et al.
Publicado: (2004)

Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research
por: Köhler, Sebastian, et al.
Publicado: (2014)

TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations
por: Tang, Haiming, et al.
Publicado: (2019)

Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation
por: Washington, Nicole L., et al.
Publicado: (2009)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
por: Wood, Valerie, et al.
Publicado: (2020)

GO-Elite: a flexible solution for pathway and ontology over-representation
por: Zambon, Alexander C., et al.
Publicado: (2012)

QuickGO: a web-based tool for Gene Ontology searching
por: Binns, David, et al.
Publicado: (2009)

Automated exploration of gene ontology term and pathway networks with ClueGO-REST
por: Mlecnik, Bernhard, et al.
Publicado: (2019)

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
por: Thomas, Paul D., et al.
Publicado: (2012)

ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
por: Pafilis, Evangelos, et al.
Publicado: (2015)

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology
por: Balsa-Canto, Eva, et al.
Publicado: (2016)

AMIGO, a toolbox for advanced model identification in systems biology using global optimization
por: Balsa-Canto, Eva, et al.
Publicado: (2011)

AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids
por: Shine, Morgan, et al.
Publicado: (2022)

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
por: Gaudet, Pascale, et al.
Publicado: (2011)

The environment ontology: contextualising biological and biomedical entities
por: Buttigieg, Pier Luigi, et al.
Publicado: (2013)

GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations
por: Dickson, Andrew, et al.
Publicado: (2023)

ontologyX: a suite of R packages for working with ontological data
por: Greene, Daniel, et al.
Publicado: (2017)

Uberon, an integrative multi-species anatomy ontology
por: Mungall, Christopher J, et al.
Publicado: (2012)

The COVID-19 Ontology
por: Sargsyan, Astghik, et al.
Publicado: (2020)

The Epilepsy Ontology: a community-based ontology tailored for semantic interoperability and text mining
por: Sargsyan, Astghik, et al.
Publicado: (2023)

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments
por: Roncaglia, Paola, et al.
Publicado: (2013)

A guide to best practices for Gene Ontology (GO) manual annotation
por: Balakrishnan, Rama, et al.
Publicado: (2013)

A method for increasing expressivity of Gene Ontology annotations using a compositional approach
por: Huntley, Rachael P, et al.
Publicado: (2014)

Integrating phenotype ontologies across multiple species
por: Mungall, Christopher J, et al.
Publicado: (2010)

Formalization of taxon-based constraints to detect inconsistencies in annotation and ontology development
por: Deegan (née Clark), Jennifer I, et al.
Publicado: (2010)

Ageism in healthcare technology: the older patients’ aspirations for improved online accessibility
por: Zoorob, Dani, et al.
Publicado: (2022)

NOA: a cytoscape plugin for network ontology analysis
por: Zhang, Chao, et al.
Publicado: (2013)

ProbOnto: ontology and knowledge base of probability distributions
por: Swat, Maciej J., et al.
Publicado: (2016)

goSTAG: gene ontology subtrees to tag and annotate genes within a set
por: Bennett, Brian D., et al.
Publicado: (2017)

CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
por: Reijnders, Maarten J. M. F., et al.
Publicado: (2022)

Un amigo como Harry Harry, un ami qui vous veut de bien /
Publicado: (2001)

Gonomics: uniting high performance and readability for genomics with Go
por: Au, Eric H, et al.
Publicado: (2023)

HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
por: Doğan, Tunca
Publicado: (2018)

Choosing preferable labels for the Japanese translation of the Human Phenotype Ontology
por: Ninomiya, Kota, et al.
Publicado: (2020)

mOWL: Python library for machine learning with biomedical ontologies
por: Zhapa-Camacho, Fernando, et al.
Publicado: (2022)

Gene Ontology: looking backwards and forwards
por: Lewis, Suzanna E
Publicado: (2005)

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
por: Buttigieg, Pier Luigi, et al.
Publicado: (2016)

libAnnotationSBML: a library for exploiting SBML annotations
por: Swainston, Neil, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_mefjk84dknm8iolouqa0ee3ii7