The Burkholderia Genome Database: facilitating flexible queries and comparative analyses

Summary: As the genome sequences of multiple strains of a given bacterial species are obtained, more generalized bacterial genome databases may be complemented by databases that are focused on providing more information geared for a distinct bacterial phylogenetic group and its associated research c...

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Detalles Bibliográficos
Autores principales: Winsor, Geoffrey L., Khaira, Bhavjinder, Van Rossum, Thea, Lo, Raymond, Whiteside, Matthew D., Brinkman, Fiona S. L.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639269/
https://www.ncbi.nlm.nih.gov/pubmed/18842600
http://dx.doi.org/10.1093/bioinformatics/btn524
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author Winsor, Geoffrey L.
Khaira, Bhavjinder
Van Rossum, Thea
Lo, Raymond
Whiteside, Matthew D.
Brinkman, Fiona S. L.
author_facet Winsor, Geoffrey L.
Khaira, Bhavjinder
Van Rossum, Thea
Lo, Raymond
Whiteside, Matthew D.
Brinkman, Fiona S. L.
author_sort Winsor, Geoffrey L.
collection PubMed
description Summary: As the genome sequences of multiple strains of a given bacterial species are obtained, more generalized bacterial genome databases may be complemented by databases that are focused on providing more information geared for a distinct bacterial phylogenetic group and its associated research community. The Burkholderia Genome Database represents a model for such a database, providing a powerful, user-friendly search and comparative analysis interface that contains features not found in other genome databases. It contains continually updated, curated and tracked information about Burkholderia cepacia complex genome annotations, plus other Burkholderia species genomes for comparison, providing a high-quality resource for its targeted cystic fibrosis research community. Availability: http://www.burkholderia.com. Source code: GNU GPL. Contact: brinkman@sfu.ca.
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spelling pubmed-26392692009-02-25 The Burkholderia Genome Database: facilitating flexible queries and comparative analyses Winsor, Geoffrey L. Khaira, Bhavjinder Van Rossum, Thea Lo, Raymond Whiteside, Matthew D. Brinkman, Fiona S. L. Bioinformatics Applications Note Summary: As the genome sequences of multiple strains of a given bacterial species are obtained, more generalized bacterial genome databases may be complemented by databases that are focused on providing more information geared for a distinct bacterial phylogenetic group and its associated research community. The Burkholderia Genome Database represents a model for such a database, providing a powerful, user-friendly search and comparative analysis interface that contains features not found in other genome databases. It contains continually updated, curated and tracked information about Burkholderia cepacia complex genome annotations, plus other Burkholderia species genomes for comparison, providing a high-quality resource for its targeted cystic fibrosis research community. Availability: http://www.burkholderia.com. Source code: GNU GPL. Contact: brinkman@sfu.ca. Oxford University Press 2008-12-01 2008-10-07 /pmc/articles/PMC2639269/ /pubmed/18842600 http://dx.doi.org/10.1093/bioinformatics/btn524 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/ by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Winsor, Geoffrey L.
Khaira, Bhavjinder
Van Rossum, Thea
Lo, Raymond
Whiteside, Matthew D.
Brinkman, Fiona S. L.
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title_full The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title_fullStr The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title_full_unstemmed The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title_short The Burkholderia Genome Database: facilitating flexible queries and comparative analyses
title_sort burkholderia genome database: facilitating flexible queries and comparative analyses
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639269/
https://www.ncbi.nlm.nih.gov/pubmed/18842600
http://dx.doi.org/10.1093/bioinformatics/btn524
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