POPE—a tool to aid high-throughput phylogenetic analysis

Summary: POPE (Phylogeny, Ortholog and Paralog Extractor) provides an integrated platform for automatic ortholog identification. Intermediate steps can be visualized, modified and analyzed in order to assess and improve the underlying quality of orthology and paralogy assignments. Availability: POPE...

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Detalles Bibliográficos
Autores principales: Juliusdottir, Thorhildur, Pettersson, Fredrik, Copley, Richard R.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639271/
https://www.ncbi.nlm.nih.gov/pubmed/18849569
http://dx.doi.org/10.1093/bioinformatics/btn533
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author Juliusdottir, Thorhildur
Pettersson, Fredrik
Copley, Richard R.
author_facet Juliusdottir, Thorhildur
Pettersson, Fredrik
Copley, Richard R.
author_sort Juliusdottir, Thorhildur
collection PubMed
description Summary: POPE (Phylogeny, Ortholog and Paralog Extractor) provides an integrated platform for automatic ortholog identification. Intermediate steps can be visualized, modified and analyzed in order to assess and improve the underlying quality of orthology and paralogy assignments. Availability: POPE is available for download from the website: http://www.well.ox.ac.uk/~tota/pope. Contact: tota@well.ox.ac.uk
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spelling pubmed-26392712009-02-25 POPE—a tool to aid high-throughput phylogenetic analysis Juliusdottir, Thorhildur Pettersson, Fredrik Copley, Richard R. Bioinformatics Applications Note Summary: POPE (Phylogeny, Ortholog and Paralog Extractor) provides an integrated platform for automatic ortholog identification. Intermediate steps can be visualized, modified and analyzed in order to assess and improve the underlying quality of orthology and paralogy assignments. Availability: POPE is available for download from the website: http://www.well.ox.ac.uk/~tota/pope. Contact: tota@well.ox.ac.uk Oxford University Press 2008-12-01 2008-10-10 /pmc/articles/PMC2639271/ /pubmed/18849569 http://dx.doi.org/10.1093/bioinformatics/btn533 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Juliusdottir, Thorhildur
Pettersson, Fredrik
Copley, Richard R.
POPE—a tool to aid high-throughput phylogenetic analysis
title POPE—a tool to aid high-throughput phylogenetic analysis
title_full POPE—a tool to aid high-throughput phylogenetic analysis
title_fullStr POPE—a tool to aid high-throughput phylogenetic analysis
title_full_unstemmed POPE—a tool to aid high-throughput phylogenetic analysis
title_short POPE—a tool to aid high-throughput phylogenetic analysis
title_sort pope—a tool to aid high-throughput phylogenetic analysis
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639271/
https://www.ncbi.nlm.nih.gov/pubmed/18849569
http://dx.doi.org/10.1093/bioinformatics/btn533
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AT petterssonfredrik popeatooltoaidhighthroughputphylogeneticanalysis
AT copleyrichardr popeatooltoaidhighthroughputphylogeneticanalysis

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