Cargando…

POPE—a tool to aid high-throughput phylogenetic analysis

Summary: POPE (Phylogeny, Ortholog and Paralog Extractor) provides an integrated platform for automatic ortholog identification. Intermediate steps can be visualized, modified and analyzed in order to assess and improve the underlying quality of orthology and paralogy assignments. Availability: POPE...

Descripción completa

Detalles Bibliográficos
Autores principales:	Juliusdottir, Thorhildur, Pettersson, Fredrik, Copley, Richard R.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2008
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639271/ https://www.ncbi.nlm.nih.gov/pubmed/18849569 http://dx.doi.org/10.1093/bioinformatics/btn533

Ejemplares similares

Toppar: an interactive browser for viewing association study results
por: Juliusdottir, Thorhildur, et al.
Publicado: (2018)

The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell
por: Junier, Thomas, et al.
Publicado: (2010)

KASPspoon: an in vitro and in silico PCR analysis tool for high-throughput SNP genotyping
por: Alsamman, Alsamman M, et al.
Publicado: (2019)

Phyx: phylogenetic tools for unix
por: Brown, Joseph W, et al.
Publicado: (2017)

TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization
por: Ollion, Jean, et al.
Publicado: (2013)

Annotare—a tool for annotating high-throughput biomedical investigations and resulting data
por: Shankar, Ravi, et al.
Publicado: (2010)

SPECTRE: a suite of phylogenetic tools for reticulate evolution
por: Bastkowski, Sarah, et al.
Publicado: (2018)

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
por: Stamatakis, Alexandros
Publicado: (2014)

Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data
por: Devailly, Guillaume, et al.
Publicado: (2016)

TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them
por: Brezovsky, Jan, et al.
Publicado: (2021)

HRIBO: high-throughput analysis of bacterial ribosome profiling data
por: Gelhausen, Rick, et al.
Publicado: (2020)

SangeR: the high-throughput Sanger sequencing analysis pipeline
por: Schmid, Kai, et al.
Publicado: (2022)

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
por: Capella-Gutiérrez, Salvador, et al.
Publicado: (2009)

NGSANE: a lightweight production informatics framework for high-throughput data analysis
por: Buske, Fabian A., et al.
Publicado: (2014)

phangorn: phylogenetic analysis in R
por: Schliep, Klaus Peter
Publicado: (2011)

MyelinJ: an ImageJ macro for high throughput analysis of myelinating cultures
por: Whitehead, Michael J, et al.
Publicado: (2019)

GLASSgo in Galaxy: high-throughput, reproducible and easy-to-integrate prediction of sRNA homologs
por: Schäfer, Richard A, et al.
Publicado: (2020)

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data
por: Jin, Victor X., et al.
Publicado: (2009)

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens
por: Wang, Xin, et al.
Publicado: (2011)

Breeze: an integrated quality control and data analysis application for high-throughput drug screening
por: Potdar, Swapnil, et al.
Publicado: (2020)

ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
por: Morel, Benoit, et al.
Publicado: (2019)

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
por: Kozlov, Alexey M, et al.
Publicado: (2019)

AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design
por: Młokosiewicz, Jakub, et al.
Publicado: (2022)

HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens
por: Scheeder, Christian, et al.
Publicado: (2017)

SanXoT: a modular and versatile package for the quantitative analysis of high-throughput proteomics experiments
por: Trevisan-Herraz, Marco, et al.
Publicado: (2019)

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R
por: Dvinge, Heidi, et al.
Publicado: (2009)

Pathway Processor 2.0: a web resource for pathway-based analysis of high-throughput data
por: Beltrame, Luca, et al.
Publicado: (2013)

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing
por: Calabrese, Claudia, et al.
Publicado: (2014)

beeRapp: an R shiny app for automated high-throughput explorative analysis of multivariate behavioral data
por: Busch, Anne Marie, et al.
Publicado: (2022)

High-throughput microbial population genomics using the Cortex variation assembler
por: Iqbal, Zamin, et al.
Publicado: (2013)

AlmostSignificant: simplifying quality control of high-throughput sequencing data
por: Ward, Joseph, et al.
Publicado: (2016)

Analysing high-throughput sequencing data in Python with HTSeq 2.0
por: Putri, Givanna H, et al.
Publicado: (2022)

DockNet: high-throughput protein–protein interface contact prediction
por: Williams, Nathan P, et al.
Publicado: (2022)

High-throughput design of bacterial anti-sense RNAs using CAREng
por: Romero, Jazmin, et al.
Publicado: (2022)

F-Seq: a feature density estimator for high-throughput sequence tags
por: Boyle, Alan P., et al.
Publicado: (2008)

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes
por: McKain, Michael R, et al.
Publicado: (2017)

PubMed QUEST: The PubMed Query Search Tool. An informatics tool to aid cancer centers and cancer investigators in searching the PubMed databases
por: Hanauer, David A., et al.
Publicado: (2007)

cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
por: Zhang, Wei, et al.
Publicado: (2021)

hipFG: high-throughput harmonization and integration pipeline for functional genomics data
por: Cifello, Jeffrey, et al.
Publicado: (2023)

RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data
por: Cloonan, Nicole, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_chtthbeshvf8mk6qs81lkj77ds