AUGIST: inferring species trees while accommodating gene tree uncertainty

Summary: AUGIST (accomodating uncertainty in genealogies while inferring species tress) is a new software package for inferring species trees while accommodating uncertainty in gene genealogies. It is written for the Mesquite software system and provides sampling procedures to incorporate uncertaint...

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Detalles Bibliográficos
Autor principal: Oliver, Jeffrey C.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2008
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639298/
https://www.ncbi.nlm.nih.gov/pubmed/18953045
http://dx.doi.org/10.1093/bioinformatics/btn556
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author Oliver, Jeffrey C.
author_facet Oliver, Jeffrey C.
author_sort Oliver, Jeffrey C.
collection PubMed
description Summary: AUGIST (accomodating uncertainty in genealogies while inferring species tress) is a new software package for inferring species trees while accommodating uncertainty in gene genealogies. It is written for the Mesquite software system and provides sampling procedures to incorporate uncertainty in gene tree reconstruction while providing confidence estimates for inferred species trees. Availability: http://www.lycaenid.org/augist/ Contact: jeffrey.oliver@yale.edu
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spelling pubmed-26392982009-02-25 AUGIST: inferring species trees while accommodating gene tree uncertainty Oliver, Jeffrey C. Bioinformatics Applications Note Summary: AUGIST (accomodating uncertainty in genealogies while inferring species tress) is a new software package for inferring species trees while accommodating uncertainty in gene genealogies. It is written for the Mesquite software system and provides sampling procedures to incorporate uncertainty in gene tree reconstruction while providing confidence estimates for inferred species trees. Availability: http://www.lycaenid.org/augist/ Contact: jeffrey.oliver@yale.edu Oxford University Press 2008-12-15 2008-10-25 /pmc/articles/PMC2639298/ /pubmed/18953045 http://dx.doi.org/10.1093/bioinformatics/btn556 Text en © 2008 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Oliver, Jeffrey C.
AUGIST: inferring species trees while accommodating gene tree uncertainty
title AUGIST: inferring species trees while accommodating gene tree uncertainty
title_full AUGIST: inferring species trees while accommodating gene tree uncertainty
title_fullStr AUGIST: inferring species trees while accommodating gene tree uncertainty
title_full_unstemmed AUGIST: inferring species trees while accommodating gene tree uncertainty
title_short AUGIST: inferring species trees while accommodating gene tree uncertainty
title_sort augist: inferring species trees while accommodating gene tree uncertainty
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639298/
https://www.ncbi.nlm.nih.gov/pubmed/18953045
http://dx.doi.org/10.1093/bioinformatics/btn556
work_keys_str_mv AT oliverjeffreyc augistinferringspeciestreeswhileaccommodatinggenetreeuncertainty

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