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Fourmidable: a database for ant genomics
BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, a...
Autores principales: | , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639375/ https://www.ncbi.nlm.nih.gov/pubmed/19126223 http://dx.doi.org/10.1186/1471-2164-10-5 |
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author | Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent |
author_facet | Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent |
author_sort | Wurm, Yannick |
collection | PubMed |
description | BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. CONCLUSION: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at |
format | Text |
id | pubmed-2639375 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-26393752009-02-11 Fourmidable: a database for ant genomics Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent BMC Genomics Database BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. CONCLUSION: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at BioMed Central 2009-01-06 /pmc/articles/PMC2639375/ /pubmed/19126223 http://dx.doi.org/10.1186/1471-2164-10-5 Text en Copyright © 2009 Wurm et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent Fourmidable: a database for ant genomics |
title | Fourmidable: a database for ant genomics |
title_full | Fourmidable: a database for ant genomics |
title_fullStr | Fourmidable: a database for ant genomics |
title_full_unstemmed | Fourmidable: a database for ant genomics |
title_short | Fourmidable: a database for ant genomics |
title_sort | fourmidable: a database for ant genomics |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639375/ https://www.ncbi.nlm.nih.gov/pubmed/19126223 http://dx.doi.org/10.1186/1471-2164-10-5 |
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