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Fourmidable: a database for ant genomics

BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, a...

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Detalles Bibliográficos
Autores principales: Wurm, Yannick, Uva, Paolo, Ricci, Frédéric, Wang, John, Jemielity, Stephanie, Iseli, Christian, Falquet, Laurent, Keller, Laurent
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639375/
https://www.ncbi.nlm.nih.gov/pubmed/19126223
http://dx.doi.org/10.1186/1471-2164-10-5
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author Wurm, Yannick
Uva, Paolo
Ricci, Frédéric
Wang, John
Jemielity, Stephanie
Iseli, Christian
Falquet, Laurent
Keller, Laurent
author_facet Wurm, Yannick
Uva, Paolo
Ricci, Frédéric
Wang, John
Jemielity, Stephanie
Iseli, Christian
Falquet, Laurent
Keller, Laurent
author_sort Wurm, Yannick
collection PubMed
description BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. CONCLUSION: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at
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spelling pubmed-26393752009-02-11 Fourmidable: a database for ant genomics Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent BMC Genomics Database BACKGROUND: Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. DESCRIPTION: The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. CONCLUSION: Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at BioMed Central 2009-01-06 /pmc/articles/PMC2639375/ /pubmed/19126223 http://dx.doi.org/10.1186/1471-2164-10-5 Text en Copyright © 2009 Wurm et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database
Wurm, Yannick
Uva, Paolo
Ricci, Frédéric
Wang, John
Jemielity, Stephanie
Iseli, Christian
Falquet, Laurent
Keller, Laurent
Fourmidable: a database for ant genomics
title Fourmidable: a database for ant genomics
title_full Fourmidable: a database for ant genomics
title_fullStr Fourmidable: a database for ant genomics
title_full_unstemmed Fourmidable: a database for ant genomics
title_short Fourmidable: a database for ant genomics
title_sort fourmidable: a database for ant genomics
topic Database
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639375/
https://www.ncbi.nlm.nih.gov/pubmed/19126223
http://dx.doi.org/10.1186/1471-2164-10-5
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