A novel method for large tree visualization

Summary: Many genomic and proteomic analyses generate as a result a tree of genes or proteins. These trees are often large (containing tens of thousands of nodes and edges), and need a visualization tool to fully display all the information contained in the tree. Clustering analysis can be performed...

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Detalles Bibliográficos
Autores principales: Heard, Jeff, Kaufmann, William, Guan, Xiaojun
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642634/
https://www.ncbi.nlm.nih.gov/pubmed/19129207
http://dx.doi.org/10.1093/bioinformatics/btn656
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author Heard, Jeff
Kaufmann, William
Guan, Xiaojun
author_facet Heard, Jeff
Kaufmann, William
Guan, Xiaojun
author_sort Heard, Jeff
collection PubMed
description Summary: Many genomic and proteomic analyses generate as a result a tree of genes or proteins. These trees are often large (containing tens of thousands of nodes and edges), and need a visualization tool to fully display all the information contained in the tree. Clustering analysis can be performed on these trees to obtain clusters of proteins, and we need an efficient way to visualize the clustering results. We present a novel tree visualization tool to help with such analyses. Availability: http://www2.renci.org/~jeff/software/bin/win32/ProteinVis-2.1.6-win32.zip Contact: jeff@renci.org; xguan@renci.org
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spelling pubmed-26426342009-02-25 A novel method for large tree visualization Heard, Jeff Kaufmann, William Guan, Xiaojun Bioinformatics Applications Note Summary: Many genomic and proteomic analyses generate as a result a tree of genes or proteins. These trees are often large (containing tens of thousands of nodes and edges), and need a visualization tool to fully display all the information contained in the tree. Clustering analysis can be performed on these trees to obtain clusters of proteins, and we need an efficient way to visualize the clustering results. We present a novel tree visualization tool to help with such analyses. Availability: http://www2.renci.org/~jeff/software/bin/win32/ProteinVis-2.1.6-win32.zip Contact: jeff@renci.org; xguan@renci.org Oxford University Press 2009-02-15 2009-01-07 /pmc/articles/PMC2642634/ /pubmed/19129207 http://dx.doi.org/10.1093/bioinformatics/btn656 Text en © 2009 The Author(s) http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Heard, Jeff
Kaufmann, William
Guan, Xiaojun
A novel method for large tree visualization
title A novel method for large tree visualization
title_full A novel method for large tree visualization
title_fullStr A novel method for large tree visualization
title_full_unstemmed A novel method for large tree visualization
title_short A novel method for large tree visualization
title_sort novel method for large tree visualization
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642634/
https://www.ncbi.nlm.nih.gov/pubmed/19129207
http://dx.doi.org/10.1093/bioinformatics/btn656
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AT guanxiaojun anovelmethodforlargetreevisualization
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AT kaufmannwilliam novelmethodforlargetreevisualization
AT guanxiaojun novelmethodforlargetreevisualization

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