Cargando…

FastMap: Fast eQTL mapping in homozygous populations

Motivation: Gene expression Quantitative Trait Locus (eQTL) mapping measures the association between transcript expression and genotype in order to find genomic locations likely to regulate transcript expression. The availability of both gene expression and high-density genotype data has improved ou...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gatti, Daniel M., Shabalin, Andrey A., Lam, Tieu-Chong, Wright, Fred A., Rusyn, Ivan, Nobel, Andrew B.
Formato:	Texto
Lenguaje:	English
Publicado:	Oxford University Press 2009
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642639/ https://www.ncbi.nlm.nih.gov/pubmed/19091771 http://dx.doi.org/10.1093/bioinformatics/btn648

Ejemplares similares

LORSEN: Fast and Efficient eQTL Mapping With Low Rank Penalized Regression
por: Gao, Cheng, et al.
Publicado: (2021)

Fast and robust group-wise eQTL mapping using sparse graphical models
por: Cheng, Wei, et al.
Publicado: (2015)

seeQTL: a searchable database for human eQTLs
por: Xia, Kai, et al.
Publicado: (2012)

Data-driven assessment of eQTL mapping methods
por: Michaelson, Jacob J, et al.
Publicado: (2010)

Incorporation of DNA methylation into eQTL mapping in African Americans
por: Singh, Anmol, et al.
Publicado: (2021)

TreeMap: a structured approach to fine mapping of eQTL variants
por: Liu, Li, et al.
Publicado: (2020)

Graph-regularized dual Lasso for robust eQTL mapping
por: Cheng, Wei, et al.
Publicado: (2014)

Mapping eQTL by leveraging multiple tissues and DNA methylation
por: Acharya, Chaitanya R., et al.
Publicado: (2017)

HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues
por: Li, Gen, et al.
Publicado: (2018)

Powerful eQTL mapping through low-coverage RNA sequencing
por: Schwarz, Tommer, et al.
Publicado: (2022)

Prior knowledge guided eQTL mapping for identifying candidate genes
por: Wang, Yunli, et al.
Publicado: (2016)

Leveraging allelic imbalance to refine fine-mapping for eQTL studies
por: Zou, Jennifer, et al.
Publicado: (2019)

eQTLMAPT: Fast and Accurate eQTL Mediation Analysis With Efficient Permutation Testing Approaches
por: Wang, Tao, et al.
Publicado: (2020)

Teamwork: Improved eQTL Mapping Using Combinations of Machine Learning Methods
por: Ackermann, Marit, et al.
Publicado: (2012)

Sparse regression models for unraveling group and individual associations in eQTL mapping
por: Cheng, Wei, et al.
Publicado: (2016)

Expression Quantitative Trait Loci (eQTL) Mapping in Puerto Rican Children
por: Chen, Wei, et al.
Publicado: (2015)

Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping
por: Guo, Yuelong, et al.
Publicado: (2017)

Expression estimation and eQTL mapping for HLA genes with a personalized pipeline
por: Aguiar, Vitor R. C., et al.
Publicado: (2019)

Fine-mapping within eQTL credible intervals by expression CROP-seq
por: Pan, Yidan, et al.
Publicado: (2020)

Whole-organism eQTL mapping at cellular resolution with single-cell sequencing
por: Ben-David, Eyal, et al.
Publicado: (2021)

Constraints on eQTL Fine Mapping in the Presence of Multisite Local Regulation of Gene Expression
por: Zeng, Biao, et al.
Publicado: (2017)

Meta-eQTL: a tool set for flexible eQTL meta-analysis
por: Di Narzo, Antonio Fabio, et al.
Publicado: (2014)

Statistical properties of interval mapping methods on quantitative trait loci location: impact on QTL/eQTL analyses
por: Wang, Xiaoqiang, et al.
Publicado: (2012)

Allelic mapping bias in RNA-sequencing is not a major confounder in eQTL studies
por: Panousis, Nikolaos I, et al.
Publicado: (2014)

eQTL mapping of rare variant associations using RNA-seq data: An evaluation of approaches
por: Lutz, Sharon Marie, et al.
Publicado: (2019)

SNP eQTL status and eQTL density in the adjacent region of the SNP are associated with its statistical significance in GWA studies
por: Gorlov, Ivan, et al.
Publicado: (2019)

Genetic and Targeted eQTL Mapping Reveals Strong Candidate Genes Modulating the Stress Response During Chicken Domestication
por: Fallahsharoudi, Amir, et al.
Publicado: (2016)

Reveal—visual eQTL analytics
por: Jäger, Günter, et al.
Publicado: (2012)

Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study
por: Sun, Wei, et al.
Publicado: (2008)

Towards the Genetic Architecture of Complex Gene Expression Traits: Challenges and Prospects for eQTL Mapping in Humans
por: Lee, Chaeyoung
Publicado: (2022)

Estimating gene-level false discovery probability improves eQTL statistical fine-mapping precision
por: Wang, Qingbo S, et al.
Publicado: (2023)

Genome-wide QTL and eQTL analyses using Mendel
por: Zhou, Hua, et al.
Publicado: (2016)

eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk
por: Nguyen, Jennifer P., et al.
Publicado: (2023)

Unique Allelic eQTL Clusters in Human MHC Haplotypes
por: Lam, Tze Hau, et al.
Publicado: (2017)

Comparative transcriptomics and eQTL mapping of response to Melampsora americana in selected Salix purpurea F(2) progeny
por: Wilkerson, Dustin G., et al.
Publicado: (2022)

eQTL Epistasis – Challenges and Computational Approaches
por: Huang, Yang, et al.
Publicado: (2013)

Insight into Genotype-Phenotype Associations through eQTL Mapping in Multiple Cell Types in Health and Immune-Mediated Disease
por: Peters, James E., et al.
Publicado: (2016)

Cross-tissue eQTL enrichment of associations in schizophrenia
por: Bettella, Francesco, et al.
Publicado: (2018)

Dissecting the eQTL Micro-Architecture in Caenorhabditis elegans
por: Sterken, Mark G., et al.
Publicado: (2020)

Mapping Novel Pathways in Cardiovascular Disease Using eQTL Data: The Past, Present, and Future of Gene Expression Analysis
por: Gupta, Rajat M., et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_brbetsbckpss4qblba7i6rl5fm