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Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

The variation in the expression patterns of the gap genes in the blastoderm of the fruit fly Drosophila melanogaster reduces over time as a result of cross regulation between these genes, a fact that we have demonstrated in an accompanying article in PLoS Biology (see Manu et al., doi:10.1371/journa...

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Autores principales: Manu, Surkova, Svetlana, Spirov, Alexander V., Gursky, Vitaly V., Janssens, Hilde, Kim, Ah-Ram, Radulescu, Ovidiu, Vanario-Alonso, Carlos E., Sharp, David H., Samsonova, Maria, Reinitz, John
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646127/
https://www.ncbi.nlm.nih.gov/pubmed/19282965
http://dx.doi.org/10.1371/journal.pcbi.1000303
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author Manu,
Surkova, Svetlana
Spirov, Alexander V.
Gursky, Vitaly V.
Janssens, Hilde
Kim, Ah-Ram
Radulescu, Ovidiu
Vanario-Alonso, Carlos E.
Sharp, David H.
Samsonova, Maria
Reinitz, John
author_facet Manu,
Surkova, Svetlana
Spirov, Alexander V.
Gursky, Vitaly V.
Janssens, Hilde
Kim, Ah-Ram
Radulescu, Ovidiu
Vanario-Alonso, Carlos E.
Sharp, David H.
Samsonova, Maria
Reinitz, John
author_sort Manu,
collection PubMed
description The variation in the expression patterns of the gap genes in the blastoderm of the fruit fly Drosophila melanogaster reduces over time as a result of cross regulation between these genes, a fact that we have demonstrated in an accompanying article in PLoS Biology (see Manu et al., doi:10.1371/journal.pbio.1000049). This biologically essential process is an example of the phenomenon known as canalization. It has been suggested that the developmental trajectory of a wild-type organism is inherently stable, and that canalization is a manifestation of this property. Although the role of gap genes in the canalization process was established by correctly predicting the response of the system to particular perturbations, the stability of the developmental trajectory remains to be investigated. For many years, it has been speculated that stability against perturbations during development can be described by dynamical systems having attracting sets that drive reductions of volume in phase space. In this paper, we show that both the reduction in variability of gap gene expression as well as shifts in the position of posterior gap gene domains are the result of the actions of attractors in the gap gene dynamical system. Two biologically distinct dynamical regions exist in the early embryo, separated by a bifurcation at 53% egg length. In the anterior region, reduction in variation occurs because of stability induced by point attractors, while in the posterior, the stability of the developmental trajectory arises from a one-dimensional attracting manifold. This manifold also controls a previously characterized anterior shift of posterior region gap domains. Our analysis shows that the complex phenomena of canalization and pattern formation in the Drosophila blastoderm can be understood in terms of the qualitative features of the dynamical system. The result confirms the idea that attractors are important for developmental stability and shows a richer variety of dynamical attractors in developmental systems than has been previously recognized.
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spelling pubmed-26461272009-03-13 Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors Manu, Surkova, Svetlana Spirov, Alexander V. Gursky, Vitaly V. Janssens, Hilde Kim, Ah-Ram Radulescu, Ovidiu Vanario-Alonso, Carlos E. Sharp, David H. Samsonova, Maria Reinitz, John PLoS Comput Biol Research Article The variation in the expression patterns of the gap genes in the blastoderm of the fruit fly Drosophila melanogaster reduces over time as a result of cross regulation between these genes, a fact that we have demonstrated in an accompanying article in PLoS Biology (see Manu et al., doi:10.1371/journal.pbio.1000049). This biologically essential process is an example of the phenomenon known as canalization. It has been suggested that the developmental trajectory of a wild-type organism is inherently stable, and that canalization is a manifestation of this property. Although the role of gap genes in the canalization process was established by correctly predicting the response of the system to particular perturbations, the stability of the developmental trajectory remains to be investigated. For many years, it has been speculated that stability against perturbations during development can be described by dynamical systems having attracting sets that drive reductions of volume in phase space. In this paper, we show that both the reduction in variability of gap gene expression as well as shifts in the position of posterior gap gene domains are the result of the actions of attractors in the gap gene dynamical system. Two biologically distinct dynamical regions exist in the early embryo, separated by a bifurcation at 53% egg length. In the anterior region, reduction in variation occurs because of stability induced by point attractors, while in the posterior, the stability of the developmental trajectory arises from a one-dimensional attracting manifold. This manifold also controls a previously characterized anterior shift of posterior region gap domains. Our analysis shows that the complex phenomena of canalization and pattern formation in the Drosophila blastoderm can be understood in terms of the qualitative features of the dynamical system. The result confirms the idea that attractors are important for developmental stability and shows a richer variety of dynamical attractors in developmental systems than has been previously recognized. Public Library of Science 2009-03-13 /pmc/articles/PMC2646127/ /pubmed/19282965 http://dx.doi.org/10.1371/journal.pcbi.1000303 Text en Manu et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Manu,
Surkova, Svetlana
Spirov, Alexander V.
Gursky, Vitaly V.
Janssens, Hilde
Kim, Ah-Ram
Radulescu, Ovidiu
Vanario-Alonso, Carlos E.
Sharp, David H.
Samsonova, Maria
Reinitz, John
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title_full Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title_fullStr Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title_full_unstemmed Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title_short Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors
title_sort canalization of gene expression and domain shifts in the drosophila blastoderm by dynamical attractors
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646127/
https://www.ncbi.nlm.nih.gov/pubmed/19282965
http://dx.doi.org/10.1371/journal.pcbi.1000303
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