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Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptor...

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Detalles Bibliográficos
Autores principales: Brick, Kevin, Watanabe, Junichi, Pizzi, Elisabetta
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646282/
https://www.ncbi.nlm.nih.gov/pubmed/19094208
http://dx.doi.org/10.1186/gb-2008-9-12-r178
Descripción
Sumario:Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition.