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Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptor...
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Formato: | Texto |
Lenguaje: | English |
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BioMed Central
2008
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646282/ https://www.ncbi.nlm.nih.gov/pubmed/19094208 http://dx.doi.org/10.1186/gb-2008-9-12-r178 |
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author | Brick, Kevin Watanabe, Junichi Pizzi, Elisabetta |
author_facet | Brick, Kevin Watanabe, Junichi Pizzi, Elisabetta |
author_sort | Brick, Kevin |
collection | PubMed |
description | Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition. |
format | Text |
id | pubmed-2646282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2008 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-26462822009-02-23 Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum Brick, Kevin Watanabe, Junichi Pizzi, Elisabetta Genome Biol Method Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition. BioMed Central 2008 2008-12-18 /pmc/articles/PMC2646282/ /pubmed/19094208 http://dx.doi.org/10.1186/gb-2008-9-12-r178 Text en Copyright © 2009 Brick et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Method Brick, Kevin Watanabe, Junichi Pizzi, Elisabetta Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title | Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title_full | Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title_fullStr | Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title_full_unstemmed | Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title_short | Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum |
title_sort | core promoters are predicted by their distinct physicochemical properties in the genome of plasmodium falciparum |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646282/ https://www.ncbi.nlm.nih.gov/pubmed/19094208 http://dx.doi.org/10.1186/gb-2008-9-12-r178 |
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