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Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptor...

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Detalles Bibliográficos
Autores principales: Brick, Kevin, Watanabe, Junichi, Pizzi, Elisabetta
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2008
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646282/
https://www.ncbi.nlm.nih.gov/pubmed/19094208
http://dx.doi.org/10.1186/gb-2008-9-12-r178
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author Brick, Kevin
Watanabe, Junichi
Pizzi, Elisabetta
author_facet Brick, Kevin
Watanabe, Junichi
Pizzi, Elisabetta
author_sort Brick, Kevin
collection PubMed
description Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition.
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spelling pubmed-26462822009-02-23 Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum Brick, Kevin Watanabe, Junichi Pizzi, Elisabetta Genome Biol Method Little is known about the structure and distinguishing features of core promoters in Plasmodium falciparum. In this work, we describe the first method to computationally identify core promoters in this AT-rich genome. This prediction algorithm uses solely DNA physicochemical properties as descriptors. Our results add to a growing body of evidence that a physicochemical code for eukaryotic genomes plays a crucial role in core promoter recognition. BioMed Central 2008 2008-12-18 /pmc/articles/PMC2646282/ /pubmed/19094208 http://dx.doi.org/10.1186/gb-2008-9-12-r178 Text en Copyright © 2009 Brick et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License ( (http://creativecommons.org/licenses/by/2.0) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Method
Brick, Kevin
Watanabe, Junichi
Pizzi, Elisabetta
Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title_full Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title_fullStr Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title_full_unstemmed Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title_short Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum
title_sort core promoters are predicted by their distinct physicochemical properties in the genome of plasmodium falciparum
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646282/
https://www.ncbi.nlm.nih.gov/pubmed/19094208
http://dx.doi.org/10.1186/gb-2008-9-12-r178
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