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Techniques for integrating ‐omics data
The challenge for -omics research is to tackle the problem of fragmentation of knowledge by integrating several sources of heterogeneous information into a coherent entity. It is widely recognized that successful data integration is one of the keys to improve productivity for stored data. Through pr...
Autores principales: | , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics Publishing Group
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646865/ https://www.ncbi.nlm.nih.gov/pubmed/19255651 |
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author | Akula, Siva Prasad Miriyala, Raghava Naidu Thota, Hanuman Rao, Allam Appa Gedela, Srinubabu |
author_facet | Akula, Siva Prasad Miriyala, Raghava Naidu Thota, Hanuman Rao, Allam Appa Gedela, Srinubabu |
author_sort | Akula, Siva Prasad |
collection | PubMed |
description | The challenge for -omics research is to tackle the problem of fragmentation of knowledge by integrating several sources of heterogeneous information into a coherent entity. It is widely recognized that successful data integration is one of the keys to improve productivity for stored data. Through proper data integration tools and algorithms, researchers may correlate relationships that enable them to make better and faster decisions. The need for data integration is essential for present ‐omics community, because ‐omics data is currently spread world wide in wide variety of formats. These formats can be integrated and migrated across platforms through different techniques and one of the important techniques often used is XML. XML is used to provide a document markup language that is easier to learn, retrieve, store and transmit. It is semantically richer than HTML. Here, we describe bio warehousing, database federation, controlled vocabularies and highlighting the XML application to store, migrate and validate -omics data. |
format | Text |
id | pubmed-2646865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | Biomedical Informatics Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-26468652009-03-02 Techniques for integrating ‐omics data Akula, Siva Prasad Miriyala, Raghava Naidu Thota, Hanuman Rao, Allam Appa Gedela, Srinubabu Bioinformation Views & Challenges The challenge for -omics research is to tackle the problem of fragmentation of knowledge by integrating several sources of heterogeneous information into a coherent entity. It is widely recognized that successful data integration is one of the keys to improve productivity for stored data. Through proper data integration tools and algorithms, researchers may correlate relationships that enable them to make better and faster decisions. The need for data integration is essential for present ‐omics community, because ‐omics data is currently spread world wide in wide variety of formats. These formats can be integrated and migrated across platforms through different techniques and one of the important techniques often used is XML. XML is used to provide a document markup language that is easier to learn, retrieve, store and transmit. It is semantically richer than HTML. Here, we describe bio warehousing, database federation, controlled vocabularies and highlighting the XML application to store, migrate and validate -omics data. Biomedical Informatics Publishing Group 2009-01-12 /pmc/articles/PMC2646865/ /pubmed/19255651 Text en © 2009 Biomedical Informatics Publishing Group This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Views & Challenges Akula, Siva Prasad Miriyala, Raghava Naidu Thota, Hanuman Rao, Allam Appa Gedela, Srinubabu Techniques for integrating ‐omics data |
title | Techniques for integrating ‐omics data |
title_full | Techniques for integrating ‐omics data |
title_fullStr | Techniques for integrating ‐omics data |
title_full_unstemmed | Techniques for integrating ‐omics data |
title_short | Techniques for integrating ‐omics data |
title_sort | techniques for integrating ‐omics data |
topic | Views & Challenges |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646865/ https://www.ncbi.nlm.nih.gov/pubmed/19255651 |
work_keys_str_mv | AT akulasivaprasad techniquesforintegratingomicsdata AT miriyalaraghavanaidu techniquesforintegratingomicsdata AT thotahanuman techniquesforintegratingomicsdata AT raoallamappa techniquesforintegratingomicsdata AT gedelasrinubabu techniquesforintegratingomicsdata |