CPSP-web-tools: a server for 3D lattice protein studies

Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and relate...

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Detalles Bibliográficos
Autores principales: Mann, Martin, Smith, Cameron, Rabbath, Mohamad, Edwards, Marlien, Will, Sebastian, Backofen, Rolf
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2009
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647832/
https://www.ncbi.nlm.nih.gov/pubmed/19151096
http://dx.doi.org/10.1093/bioinformatics/btp034
Descripción
Sumario:Summary: Studies on proteins are often restricted to highly simplified models to face the immense computational complexity of the associated problems. Constraint-based protein structure prediction (CPSP) tools is a package of very fast algorithms for ab initio optimal structure prediction and related problems in 3D HP-models [cubic and face centered cubic (FCC)]. Here, we present CPSP-web-tools, an interactive online interface of these programs for their immediate use. They include the first method for the direct prediction of optimal energies and structures in 3D HP side-chain models. This newest extension of the CPSP approach is described here for the first time. Availability and Implementation: Free access at http://cpsp.informatik.uni-freiburg.de Contact: cpsp@informatik.uni-freiburg.de; cpsp@informatik.uni-freiburg.de

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